Tomato Genome Publications

Selected Publications related to the tomato genome sequence 
  • Todesco S., Campagna D., Levorin F., D'Angelo M., Schivaon R., Valle G., Vezzi A.
    PABS: An online platform to assist BAC-by-BAC sequencing projects. (2008) BioTechniques 44:60-64.
  • Amalia Barone, Maria Luisa Chiusano, Maria Raffaella Ercolano, Giovanni Giuliano, Silvana Grandillo, and Luigi Frusciante.
    Structural and Functional Genomics of Tomato. (2008) International Journal of Plant Genomics, vol. 2008
  • S.-B. Chang, L.K. Anderson, J.D. Sherman, S.M. Royer, and S.M. Stack.
    Predicting and testing physical locations of genetically mapped loci on tomato pachytene chromosome (2008) Genetics 176: 2131-2138.
  • Kahlau S, Aspinall S, Gray JC, Bock R.
    Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes.
    J Mol Evol. 2006 Aug;63(2):194-207. Epub 2006 Jul 7. PubMed
  • Peters SA, van Haarst JC, Jesse TP, Woltinge D, Jansen K, Hesselink T, van Staveren MJ, Abma-Henkens MH, Klein-Lankhorst RM. (2006)
    TOPAAS, a tomato and potato assembly assistance system for selection and finishing of bacterial artificial chromosomes.
    Plant Physiol. 2006 Mar;140(3):805-17. PubMed
  • Wang Y, Tang X, Cheng Z, Mueller L, Giovannoni J, Tanksley SD.
    Euchromatin and pericentromeric heterochromatin: comparative composition in the tomato genome.
    Genetics. 2006 Apr;172(4):2529-40. Epub 2006 Feb 19. PubMed
  • Wang Y, van der Hoeven RS, Nielsen R, Mueller LA, Tanksley SD.
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor Appl Genet. 2005 Dec;112(1):72-84. Epub 2005 Oct 6. PubMed
  • Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD.
    The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond.
    Plant Physiol. 2005 Jul;138(3):1310-7. PubMed
  • Budiman MA, Mao L, Wood TC, Wing RA.
    A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing.
    Genome Res. 2000 Jan;10(1):129-36. PubMed
  • Areshchenkova T, Ganal MW.
    Long tomato microsatellites are predominantly associated with centromeric regions.
    Genome. 1999 Jun;42(3):536-44. PubMed
  • Peterson DG, Lapitan NL, Stack SM.
    Localization of single- and low-copy sequences on tomato synaptonemal complex spreads using fluorescence in situ hybridization (FISH).
    Genetics. 1999 May;152(1):427-39. PMID: 10224272
  • Peterson DG, Price HJ, Johnston JS, Stack SM.
    DNA content of heterochromatin and euchromatin in tomato (Lycoperiscon esculentum) pachytene chromsosomes.
    Genome, 1996. 39:299-315.
  • Xu J, Earle ED.
    High resolution physical mapping of 45S (5.8S, 18S and 25S) rDNA gene loci in the tomato genome using a combination of karyotyping and FISH of pachytene chromosomes.
    Chromosoma. 1996 Jun;104(8):545-50. PubMed
  • Zhong XB, Hans de Jong J, Zabel P.
    Preparation of tomato meiotic pachytene and mitotic metaphase chromosomes suitable for fluorescence in situ hybridization (FISH).
    Chromosome Res. 1996 Jan;4(1):24-8. PubMed
  • Sherman JD, Stack SM.
    Two-dimensional spreads of synaptonemal complexes from solanaceous plants. VI. High-resolution recombination nodule map for tomato (Lycopersicon esculentum).
    Genetics. 1995 Oct;141(2):683-708. PubMed
  • Arumuganathan K and Earle E.
    Estimation of nuclear DNA content of plants by flow cytometry.
    Plant Mol Biol Rep. 9:208-218.
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