SOL Publications

The SGN comparative map viewer
Mueller L.A. et al. Bioinformatics (2008).
Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato
Datema E. et al. BMC Plant Biol. (2008).
A new class of regulatory genes underlying the cause of pear-shaped tomato fruit.
Liu J et al. PNAS (2002).
Characterization of genes controlling stamen identity and development in a parthenocarpic tomato mutant indicates a role for the DEFICIENS ortholog in the control of fruit set
Mazzucato A. et al. Physiol. Plant (2008).
A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit
Xiao H. et al. Science (2008).
The Pun1 gene for pungency in pepper encodes a putative acyltransferase.
Stewart C. et al.
Differential regulation of the tomato ETR gene family throughout plant development
Coralie C. Lashbrook, Denise M. Tieman & Harry J. Klee
Synergism between the chaperone-like activity of the stress regulated ASR1 protein and the osmolyte glycine-betaine.
Zvia Konrad and Dudy Bar-Zvi
A BELL1-like gene of potato is light activated and wound inducible.
Mithu Chatterjee, Anjan K. Banerjee and David J. Hannapel Plant Physiology 145:1435-1443 (2007)
Phytoene synthase genes in tomato (Solanum lycopersicum L.) - new data on the structures, the deduced amino acid sequences and the expression patterns
Giovanni Giorio, Adriana Lucia Stigliani, Caterina D'Ambrosio (2008) FEBS Journal 275 (3), 527Đ535.
The novel gene Ny-1 on potato chromosome IX confers hypersensitive resistance to Potato virus Y and is an alternative to Ry genes in potato breeding for PVY resistance
K. Szajko, M. Chrzanowska, K. Witek, D. Strzelczyk-Zyta, H. Zagórska, C. Gebhardt, J. Hennig and W. Marczewski
Diversity in conserved genes in tomato
Allen E Van Deynze, Kevin Stoffel, Robin C Buell, Alexander Kozik, Jia Liu, Esther van der Knaap and David Francis
Nitric oxide accumulation is required for molecular and physiological responses to iron deficiency in tomato roots
Magdalena Graziano, Lorenzo Lamattina
Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes.
Chen KY, Cong B, Wing R, Vrebalov J, Tanksley SD. [Oct 26 2007]
Tomato fruit set driven by pollination or by the parthenocarpic fruit allele are mediated by transcriptionally-regulated gibberellin biosynthesis.
Olimpieri I, Siligato F, Caccia R, Mariotti L, Ceccarelli N, Soressi GP, Mazzucato A [Oct 9, 2007]
Predicting and testing physical locations of genetically mapped loci on tomato pachytene chromosome 1
S.-B. Chang, L.K. Anderson, J.D. Sherman, S.M. Royer, and S.M. Stack. [Sept 27, 2007]
An inhibitor of viral RNA replication is encoded by a plant resistance gene
Kazuhiro Ishibashi, Kiyoshi Masuda, Satoshi Naito, Tetsuo Meshi, and Masayuki Ishikawa [Sept 4, 2007]
A bacterial E3 ubiquitin ligase targets a host protein kinase to disrupt plant immunity.
Rosebrock TR, Zeng L, Brady JJ, Abramovitch RB, Xiao F, Martin GB.
A conserved microRNA module exerts homeotic control over Petunia hybrida and Antirrhinum majus floral organ identity
Maria Cartolano, Rosa Castillo, Nadia Efremova, Markus Kuckenberg, Jan Zethof, Tom Gerats, Zsuzsanna Schwarz-Sommer and Michiel Vandenbussche
Capsicum annuum CCR4-associated factor CaCAF1 is necessary for plant development and defence response.
Sarowar S, Oh HW, Cho HS, Baek KH, Seong ES, Joung YH, Choi GJ, Lee S, Choi D.
Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato
Ori N, Cohen AR, Etzioni A, Brand A, Yanai O, Shleizer S, Menda N, Amsellem Z, Efroni I, Pekker I, Alvarez JP, Blum E, Zamir D, Eshed Y. Nat. Genet. [May 7, 2007]
Metabolic Engineering of Potato Carotenoid Content through Tuber-Specific Overexpression of a Bacterial Mini-Pathway
Diretto G, Al-Babili S, Tavazza R, Papacchioli V, Beyer P, et al. 2007. PLoS ONE 2(4): e350.
The distribution of plant mating systems: study bias against obligately outcrossing species.
Igic B, Kohn JR. Evolution Int J Org Evolution. 2006 May;60(5):1098-103 [Mar 21, 2007]
Agronomic performance and transcriptional analysis of carotenoid biosynthesis in fruits of transgenic HighCaro and control tomato lines under field conditions.
Giovanni Giorio, Adriana Lucia Stigliani and Caterina D'Ambrosio. Transgenic Res. 2006
[Dec 13, 2006]
A microsatellite marker based linkage map of tobacco
Gregor Bindler, Rutger van der Hoeven, Irfan Gunduz, Jörg Plieske, Martin Ganal, Luca Rossi, Ferruccio Gadani and Paolo Donini [Dec 1, 2006]
Tomatoes, tomato products and lycopene in the prevention and treatment of prostate cancer: do we have the evidence from intervention studies?
Sabine Ellinger,Joerg Ellinger and Peter Stehle
Characterization of Capsaicin synthase and identification of its gene (csy1) for pungency factor capsaicin in pepper (Capsicum sp.)
B. C. Narasimha Prasad, Vinod Kumar, H. B. Gururaj, R. Parimalan, P. Giridhar, G. A. Ravishankar
A naturally occurring epigenetic mutation in an SBP-box transcription factor inhibits tomato fruit ripening. Nature Genetics
Manning, K., Tor, M., Poole, M., Hong, Y., Thompson, A.J., King, G.J. , Giovannoni, J.J. and Seymour, G.B.
Stability over genetic backgrounds, generations and years of quantitative trait locus (QTLs) for organoleptic quality in tomato
J. Chaib, L. Lecomte, M. Buret, M. Causse
Agroinjection of Tomato Fruits--A Tool for Rapid Functional Analysis of Transgenes Directly in Fruit
Diego Orzaez, Sophie Mirabel, Willemien H. Wieland, and Antonio Granell
Ripening in the tomato Green-ripe mutant is inhibited by ectopic expression of a protein that disrupts ethylene signaling
Cornelius S. Barry and James J. Giovannoni
Transcriptome and Selected Metabolite Analyses Reveal Multiple Points of Ethylene Control during Tomato Fruit Development
Rob Alba, Paxton Payton, Zhanjun Fei, Ryan McQuinn, Paul Debbie, Gregory B. Martin, Steven D. Tanksley, and James J. Giovannoni
Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts.
Lin C, Mueller LA, McCarthy J, Crouzillat D, Petiard V, Tanksley SD.
Theor Appl Genet. 2005 Nov 5;:1-17

A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping.
David M. Spooner, Karen McLean, Gavin Ramsay, Robbie Waugh, and Glenn J. Bryan
Proc Natl Acad Sci U S A. 2005 Oct 3

New Species of Wild Tomatoes (Solanum Section Lycopersicon: Solanaceae) from Northern Peru.
Peralta, I. E., Knapp, S., Spooner, D. M
Systematic Botany 2005 30(2): 424-434

QTLs mapping for fruit size and shape in chromosomes 2 and 4 in pepper and a comparison of the pepper QTL map with that of tomato.
Zygier, S., A. B. Chaim, et al.
Theor Appl Genet. 2005 Jun 28

A model system for comparative research: Petunia
Gerats T, Vandenbussche M.
Trends Plant Sci. 2005 May; 10(5): 251-61.

Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato
Huang S, van der Vossen EA, Kuang H, Vleeshouwers VG, Zhang N, Borm TJ, van Eck HJ, Baker B, Jacobsen E, Visser RG
Plant J. 2005 Apr; 42(2): 251-61.

Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR
Tam SM, Mhiri C, Vogelaar A, Kerkveld M, Pearce SR, Grandbastien MA
Theor Appl Genet. 2005 Feb 8.

PoMaMo--a comprehensive database for potato genome data
Meyer S, Nagel A, Gebhardt C.
Nucl. Acids Res. 2005 33: D666-670

Zooming in on a Quantitative Trait for Tomato Yield Using Interespecific Introgressions.
Fridman, E.; Carrari, F.; Liu, Y.; Fernie, A.R. and Zamir, D.
Science 305: 1786-1789.

Comprehensive EST analysis of tomato and comparative genomics of fruit ripening.
Zhangjun Fei, Xuemei Tang, Rob M. Alba, Joseph A. White, Catherine M. Ronning, Gregory B. Martin, Steven D. Tanksley and James J. Giovannoni
The Plant Journal 40: 47-59.

Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions.
Clarkson JJ, Knapp S, Garcia VF, Olmstead RG, Leitch AR, Chase MW.
Mol Phylogenet Evol. Oct;33(1):75-90.

In silico screening of a saturated mutation library of tomato.
Menda, N; Semel, Y; Peled, D; Eshed, Y; Zamir, D.
The Plant Journal 38: 861-872.

Convergent evolution within the genus Solanum: the specialized anther cone develops through alternative pathways.
Glover, B.J.; Bunnewell, S. and Martin C.
Gene 331: 1-7.

Tubulin-based polymorphism (TBP): a new tool, based on funcionally relevant sequences, to assess genetic diversity in plant species.
Bardini, M, Lee,D, Donini, P, Mariani, A, Giani, S, Toschi, M, Lowe, C and Breviario, D.
Genome 47: 281-291.

The tomato homolog of the gene encoding UV-damaged DNA binding protein 1 (DDB1) underlined as the gene that causes the high pigment-1 mutant phenotype.
Lieberman M, Segev O, Gilboa N, Lalazar A, Levin I.
Theor Appl Genet. 2004 Feb 14 [Epub ahead of print]

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants.
Ouyang, S, Buell CR.
Nucleic Acids Res. 32:D360-D363

Structure and expression of phosphoenolpyruvate carboxylase kinase genes in solanaceae. A novel gene exhibits alternative splicing.
Marsh JT, Sullivan S, Hartwell J, Nimmo HG.
Plant Physiology 133: 1-8.

Construction of two BAC libraries from the wild Mexican diploid potato, Solanum pinnatisectum, and the identification of clones near the late blight and Colorado potato beetle resistance loci.
Chen Q, Sun S, Ye Q, McCuine S, Huff E, Zhang HB.
Theor Appl Genet. 2003 Nov 20

SINGLE FLOWER TRUSS regulates the transition and maintenance of flowering in tomato
Molinero-Rosales N, Latorre A, Jamilena M, Lozano R.
Planta 2003 Sep 23 [Epub ahead of print]

Genetics of drought tolerance during seed germination in tomato: inheritance and QTL mapping
Foolad MR, Zhang LP, Subbiah P
Genome 2003 Aug;46(4):536-45