Solanum lycopersicum mRNA Solyc03g123610.2.1
 mRNA details
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| Name | Type |
Length
2,194
|
Organism |
|
Description
Alanine aminotransferase (AHRD V1 ***- Q6VEJ5_CAPAN); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II
|
|
Location(s)
SL2.50ch03:70411490..70418218
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0009058
- GO:0030170
- Length
- 6729
- Nb exon
- 17
- Sifter term
- GO:0005524
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc03g123610.2.1 Alanine aminotransferase (AHRD V1 ***- Q6VEJ5_CAPAN); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II
GGGCGGCGATTGGGTGGTCGCCATCGTCAGAATACCCATAGACTACTTCTCTATTAAAAATAAAATATCTTCGCCAATCAGAGTCAAGATAGGGTACTAATTCTCTGCTAAAAACGTGGGCGTCAAGTCAAAAGTGCGCTCGATTTATGCGAAAAGTGGTAAAAAAGTTGGTGAATCGTAAACGTTCACCGTTCTTCACTCTCCGCCCACTGTTCGCCAAATCCATAATGCGGAGATTCGTTGCTGATAAAGCCAAAACTCTCATCAATAGGAGCAGGACCACCTGTTCGTCTTCTTTTCCTCCTCCTATTATTACTTCTACTTCCGTGTTGCAGCGGCTCACCTCTTCTTCTTCTTCTTCATCTCAATCAACTGCTGTTCTTCGTTTTTTATCCACTTCTTCTGATTCAATGGCTTCCGATTATTCATCCACTCCGGTCACTCTTAACAACGTTAACCCAAAGGTTTTGAAATGTGAATATGCTGTCCGAGGAGAAATAGTCAACCTTGCTCAGAAATTACAACAAGACCTCAAGGAGAATCCAGGCTCTCATCCCTTTGATGAGATCTTATACTGCAATATTGGAAATCCTCAATCCCTGGCTCAGCAGCCTATTACTTTCTTTAGGGAGGTCCTTGCATTATGTGATCATCCACTTATTTTGGACAAAAGTGAAACTCAAGGTTTGTTCAGTGCGGATTCAATAGAACGAGCTTTTCAGATCCTCGACCAAATTCCTGGTAGAGCAACAGGTGCATACAGCCACAGTCAGGGTATCAAAGGATTACGTGATACAATTGCTTCTGGTATCGAAGCTCGTGATGGCTTCCCTGCCGATCCAAATGATATTTTCTTGACTGATGGTGCAAGCCCTGCGGTTCACATGATGATGCAGTTGCTCATCGGGTCAGAGAATGACGGAATTCTCTGTCCCATCCCCCAATATCCTCTTTATTCTGCTTCGATTGCTCTCCATGGTGGCACTCTCGTTCCTTATTATCTTGATGAGGAAACAGGATGGGGACTTGAGGTCTCAGAGCTTGAGAATCAGCTGAAAACTGCAAAATCTAAGGGTATTAACGTTAGGGCTTTGGCTGTGATCAATCCAGGCAACCCAACTGGGCAGGTTCTCGCTGAGGCTAACCAACGAGAAATTGTGGAATTCTGCAAGAAAGAAGGCCTTGTTCTTCTGGCGGATGAAGTGTATCAGGAAAATGTTTATGTGCCTGAGAAGCAGTTCCACTCATTTAAGAAAGTTGCCCGCTCTATGGGATTTGGAGAAAAGGACATCTCTTTAGTTTCTTTTCAGTCTGTGTCTAAAGGATTCTATGGAGAGTGTGGAAAGCGAGGAGGTTACATGGAGGTTACTGGATTTAGCCCTGAGATAAGAGAACAGATATACAAAGTGGCATCTGTCAATCTGTGTTCCAACATTTCTGGTCAGATTCTTGCGAGCCTTGTCATGAGCCCTCCGAAGGTGGGTGATGAATCATACGAGTCTTTTGCTGCTGAGAAAGAAGGGATACTTTCATCCTTGGCAAGACGTGCAAAGACACTAGAAGATGCATTCAGTAATTTGGAGGGAGTAACATGCAATAAAGCAGAGGGTGCAATGTATCTATTTCCACGTATCAACTTACCTGACAAAGCAATAAAAGCAGCAGAAGAAGCTAAAATTGCACCAGATGCATTTTATGCTCGGCACCTCCTTAATGCTACCGGAATTGTTGTTGTCCCAGGCTCTGGATTTGGCCAGTCAAGCGTCCTGGAACGTGGCATTTTAGGTGCACAATATTACCGCAAGAAGAGAAGATACCAGCTATTGTATCTCGTCTTACAGAATTCCATAAGCTGTTCATGGATGAATTCCGCGGCTAAGGAGTCTGGGGTAGTGAAAGCTGATATAGGATTGTTTGGCACATACAAGTTGGCGATTGTTTATTCTTCTATTTTGGACTTGACTTGACATTGATCCTCTCTCCTAGATGATCAATGTGAAGATTGTTTTGTATACCAAACAGGTAAAGCTTTTGCAATCTTATTTTTAACGCAGGCAGTGTTTGTCACTTCCAACTGGTATCAAGTCCAGTTTTATATCACCACTGGGCAAGTTATAACCTCGTTTTTATTGACCCTTCATATCTAGTTTGTGGATTATGGTTGCATATGCAGCATGACTTTAGTCATAGGAGC
GGGCGGCGATTGGGTGGTCGCCATCGTCAGAATACCCATAGACTACTTCTCTATTAAAAATAAAATATCTTCGCCAATCAGAGTCAAGATAGGGTACTAATTCTCTGCTAAAAACGTGGGCGTCAAGTCAAAAGTGCGCTCGATTTATGCGAAAAGTGGTAAAAAAGTTGGTGAATCGTAAACGTTCACCGTTCTTCACTCTCCGCCCACTGTTCGCCAAATCCATAATGCGGAGATTCGTTGCTGATAAAGCCAAAACTCTCATCAATAGGAGCAGGACCACCTGTTCGTCTTCTTTTCCTCCTCCTATTATTACTTCTACTTCCGTGTTGCAGCGGCTCACCTCTTCTTCTTCTTCTTCATCTCAATCAACTGCTGTTCTTCGTTTTTTATCCACTTCTTCTGATTCAATGGCTTCCGATTATTCATCCACTCCGGTCACTCTTAACAACGTTAACCCAAAGGTTTTGAAATGTGAATATGCTGTCCGAGGAGAAATAGTCAACCTTGCTCAGAAATTACAACAAGACCTCAAGGAGAATCCAGGCTCTCATCCCTTTGATGAGATCTTATACTGCAATATTGGAAATCCTCAATCCCTGGCTCAGCAGCCTATTACTTTCTTTAGGGAGGTCCTTGCATTATGTGATCATCCACTTATTTTGGACAAAAGTGAAACTCAAGGTTTGTTCAGTGCGGATTCAATAGAACGAGCTTTTCAGATCCTCGACCAAATTCCTGGTAGAGCAACAGGTGCATACAGCCACAGTCAGGGTATCAAAGGATTACGTGATACAATTGCTTCTGGTATCGAAGCTCGTGATGGCTTCCCTGCCGATCCAAATGATATTTTCTTGACTGATGGTGCAAGCCCTGCGGTTCACATGATGATGCAGTTGCTCATCGGGTCAGAGAATGACGGAATTCTCTGTCCCATCCCCCAATATCCTCTTTATTCTGCTTCGATTGCTCTCCATGGTGGCACTCTCGTTCCTTATTATCTTGATGAGGAAACAGGATGGGGACTTGAGGTCTCAGAGCTTGAGAATCAGCTGAAAACTGCAAAATCTAAGGGTATTAACGTTAGGGCTTTGGCTGTGATCAATCCAGGCAACCCAACTGGGCAGGTTCTCGCTGAGGCTAACCAACGAGAAATTGTGGAATTCTGCAAGAAAGAAGGCCTTGTTCTTCTGGCGGATGAAGTGTATCAGGAAAATGTTTATGTGCCTGAGAAGCAGTTCCACTCATTTAAGAAAGTTGCCCGCTCTATGGGATTTGGAGAAAAGGACATCTCTTTAGTTTCTTTTCAGTCTGTGTCTAAAGGATTCTATGGAGAGTGTGGAAAGCGAGGAGGTTACATGGAGGTTACTGGATTTAGCCCTGAGATAAGAGAACAGATATACAAAGTGGCATCTGTCAATCTGTGTTCCAACATTTCTGGTCAGATTCTTGCGAGCCTTGTCATGAGCCCTCCGAAGGTGGGTGATGAATCATACGAGTCTTTTGCTGCTGAGAAAGAAGGGATACTTTCATCCTTGGCAAGACGTGCAAAGACACTAGAAGATGCATTCAGTAATTTGGAGGGAGTAACATGCAATAAAGCAGAGGGTGCAATGTATCTATTTCCACGTATCAACTTACCTGACAAAGCAATAAAAGCAGCAGAAGAAGCTAAAATTGCACCAGATGCATTTTATGCTCGGCACCTCCTTAATGCTACCGGAATTGTTGTTGTCCCAGGCTCTGGATTTGGCCAGTCAAGCGTCCTGGAACGTGGCATTTTAGGTGCACAATATTACCGCAAGAAGAGAAGATACCAGCTATTGTATCTCGTCTTACAGAATTCCATAAGCTGTTCATGGATGAATTCCGCGGCTAAGGAGTCTGGGGTAGTGAAAGCTGATATAGGATTGTTTGGCACATACAAGTTGGCGATTGTTTATTCTTCTATTTTGGACTTGACTTGACATTGATCCTCTCTCCTAGATGATCAATGTGAAGATTGTTTTGTATACCAAACAGGTAAAGCTTTTGCAATCTTATTTTTAACGCAGGCAGTGTTTGTCACTTCCAACTGGTATCAAGTCCAGTTTTATATCACCACTGGGCAAGTTATAACCTCGTTTTTATTGACCCTTCATATCTAGTTTGTGGATTATGGTTGCATATGCAGCATGACTTTAGTCATAGGAGC
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc03g123610.2.1 | SL2.50ch03:70411716..70418072 | 607 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc03g123610.2 | SL2.50ch03:70411490..70418218 | 6,729 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc03g123610.2.1.1 | SL2.50ch03:70417755..70418218 | 464 | - | n/a |
| exon | exon:Solyc03g123610.2.1.10 | SL2.50ch03:70414361..70414435 | 75 | - | n/a |
| exon | exon:Solyc03g123610.2.1.11 | SL2.50ch03:70414057..70414177 | 121 | - | 2 |
| exon | exon:Solyc03g123610.2.1.12 | SL2.50ch03:70413731..70413885 | 155 | - | n/a |
| exon | exon:Solyc03g123610.2.1.13 | SL2.50ch03:70413079..70413153 | 75 | - | n/a |
| exon | exon:Solyc03g123610.2.1.14 | SL2.50ch03:70412595..70412798 | 204 | - | n/a |
| exon | exon:Solyc03g123610.2.1.15 | SL2.50ch03:70412219..70412223 | 5 | - | 1 |
| exon | exon:Solyc03g123610.2.1.16 | SL2.50ch03:70411888..70412015 | 128 | - | 2 |
| exon | exon:Solyc03g123610.2.1.17 | SL2.50ch03:70411490..70411793 | 304 | - | n/a |
| exon | exon:Solyc03g123610.2.1.2 | SL2.50ch03:70417149..70417199 | 51 | - | n/a |
| exon | exon:Solyc03g123610.2.1.3 | SL2.50ch03:70416942..70416992 | 51 | - | n/a |
| exon | exon:Solyc03g123610.2.1.4 | SL2.50ch03:70416715..70416780 | 66 | - | n/a |
| exon | exon:Solyc03g123610.2.1.5 | SL2.50ch03:70416590..70416651 | 62 | - | 1 |
| exon | exon:Solyc03g123610.2.1.6 | SL2.50ch03:70415383..70415461 | 79 | - | n/a |
| exon | exon:Solyc03g123610.2.1.7 | SL2.50ch03:70415196..70415300 | 105 | - | n/a |
| exon | exon:Solyc03g123610.2.1.8 | SL2.50ch03:70414984..70415094 | 111 | - | n/a |
| exon | exon:Solyc03g123610.2.1.9 | SL2.50ch03:70414610..70414747 | 138 | - | n/a |
| intron | intron:Solyc03g123610.2.1.10 | SL2.50ch03:70414436..70414609 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.11 | SL2.50ch03:70414178..70414360 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.12 | SL2.50ch03:70413886..70414056 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.13 | SL2.50ch03:70413154..70413730 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.14 | SL2.50ch03:70412799..70413078 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.15 | SL2.50ch03:70412224..70412594 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.16 | SL2.50ch03:70412016..70412218 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.17 | SL2.50ch03:70411794..70411887 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.2 | SL2.50ch03:70417200..70417754 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.3 | SL2.50ch03:70416993..70417148 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.4 | SL2.50ch03:70416781..70416941 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.5 | SL2.50ch03:70416652..70416714 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.6 | SL2.50ch03:70415462..70416589 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.7 | SL2.50ch03:70415301..70415382 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.8 | SL2.50ch03:70415095..70415195 | n/a | - | n/a |
| intron | intron:Solyc03g123610.2.1.9 | SL2.50ch03:70414748..70414983 | n/a | - | n/a |
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