Solanum lycopersicum mRNA Solyc08g074270.2.1
 mRNA details
|
| Name | Type |
Length
1,950
|
Organism |
|
Description
Cryptochrome 3
|
|
Location(s)
SL2.50ch08:58368991..58374303
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0006281
- Length
- 5313
- Nb exon
- 13
- Sifter term
- GO:0003684
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc08g074270.2.1 Cryptochrome 3
ATGATCAAACAACCCTTCTTGTTAACCAAATTTACTCCATTTTCAAGCAAATCAAAGCACACCCTTTTCACATTCCACTGCAATTTCTCCATAAAAATGGCTTCTTTAACTGCCAGAACAACACCCACTGTTCAAAATGTTCCAGGACTGACCCCTGAAGAAATGGAGAGAGTTTGTGAACAGACTTTTCAGAGATATGAGTCTGGTGGTTTGGGTAAGAGGAAAGGTAAAGGGGTTGCTATTGTTTGGTTCAGGAATGATTTGAGGGTACTGGATAATGAAGCTCTTTTAAGAGCTTGGGTTTCATCTGAAGCAATCTTGCCTGTGTATTGTGTTGATCCTAGGCTTTTTGGGACTACCCATTACTTTGGAATGCCCAAAACAGGAGCTTTAAGGGCTCAATTCATCATAGAGTGCTTAAATGACTTGAAAAGGAACCTAGTGAAGCGGGGACTTGACCTATTAATTCAACATGGTAAACCAGAAGATATTGTCCCCTCCTTGGCGAAAGCTTACAAGGCACACACAGTGTATGCCCACAAGGAAACATGCAGTGAGGAAGTAAAAGTAGAAAAAATGGTCACCAGAAATCTGCAAAAGCTTGTATCGCCATCATCTGGTGGAATAGGCAATGATCCAGGATCTGGAAATACTACTAAGCTGGAATTAGTCTGGGGTAGTACAATGTATCATATAGATGACCTTCCATTTGACTGTGAGAGTTTACCAGATGTGTACACTCAGTTCCGTAAGTCAGTGGAATACAAATCAAAAGTTCGTAATTGCACTAAACTCCCAACATCATTTGGTCCTCCACCAGAGGTTGGGGATTGGGGACATGTCCCACAAGTTTCTGAGCTCGGGCTTCAGCAGGAAAAGGTTTCTAAAGGAATGAACTTTGTTGGAGGTGAAAGTGCTGCACTGGGTAGGGTACATGATTACTTTTGGAAGAAGGATTTATTAAAAGTGTATAAAGAGACTCGAAATGGAATGTTAGGAGCTGATTATTCTACAAAGTTCTCTCCTTGGCTTGCTTCAGGAAGTCTGTCTCCCCGTTTTATATATGAAGAGGTGAAGAGATATGAGAAGGAAAGACTATCAAATGATTCAACATACTGGGTTTTGTTTGAATTAATATGGAGGGATTACTTCAGATTTCTCTCAATCAAACTAGCAAATTTGCTGTTTCAAGCAGGAGGCCCTCAAAAGGTAAATATTAACTGGAGCCAAGACCAAACCATGTTTGATGCCTGGAGACGAGGGCAAACCGGGTATCCTTTAATTGATGCCAACATGAAAGAACTAGCTGCTACTGGATACATGTCGAATCGAGGACGACAGATTGTGTGTTCTTTTCTTGTTCGAGATATGGGCATCGACTGGCGGATGGGAGCTGAATGGTTTGAGACATGCCTCTTGGATTATGATCCTTGCTCCAACTATGGCAACTGGACATATGGAGCAGGTGTTGGCAATGACCCGAGAGAAGACCGTTACTTCAGCATTCCGAAGCAAGCTCAAAACTATGATCCTGAAGGGGAGTTTGTTGCATACTGGTTACCAGAGTTAAGAGCACTTCCAAGAGAGAAAAGACACTCTCCTGGAATGATGTACTTAAATCCAATCGTAGCTCTCAAACATGGATATACCAAGAAGACTGGTGATTCAAAAACAGCCTTTTCATCAAGAAGAGGCAGACCAGAAGACAATAGACGAAAGCGACACGGCTACTGATTTTCAGGTCATAAGTCACGAAATTGCAACTGAGATGAGTTTGTTTGCTGCATAATATTCTTTATGTAATAAATACATCTGTGAGTAGAACTAGCCTGATCTCACCTGCGCTACTATACTGGGTATGTTGTTGTTGTCTGTTAGTAGAGCTAGCCTTGATCACATTGGGTATCTGGGAGCATGGAAATATGAAGATTGTGAAATTGGCTACTATTA
ATGATCAAACAACCCTTCTTGTTAACCAAATTTACTCCATTTTCAAGCAAATCAAAGCACACCCTTTTCACATTCCACTGCAATTTCTCCATAAAAATGGCTTCTTTAACTGCCAGAACAACACCCACTGTTCAAAATGTTCCAGGACTGACCCCTGAAGAAATGGAGAGAGTTTGTGAACAGACTTTTCAGAGATATGAGTCTGGTGGTTTGGGTAAGAGGAAAGGTAAAGGGGTTGCTATTGTTTGGTTCAGGAATGATTTGAGGGTACTGGATAATGAAGCTCTTTTAAGAGCTTGGGTTTCATCTGAAGCAATCTTGCCTGTGTATTGTGTTGATCCTAGGCTTTTTGGGACTACCCATTACTTTGGAATGCCCAAAACAGGAGCTTTAAGGGCTCAATTCATCATAGAGTGCTTAAATGACTTGAAAAGGAACCTAGTGAAGCGGGGACTTGACCTATTAATTCAACATGGTAAACCAGAAGATATTGTCCCCTCCTTGGCGAAAGCTTACAAGGCACACACAGTGTATGCCCACAAGGAAACATGCAGTGAGGAAGTAAAAGTAGAAAAAATGGTCACCAGAAATCTGCAAAAGCTTGTATCGCCATCATCTGGTGGAATAGGCAATGATCCAGGATCTGGAAATACTACTAAGCTGGAATTAGTCTGGGGTAGTACAATGTATCATATAGATGACCTTCCATTTGACTGTGAGAGTTTACCAGATGTGTACACTCAGTTCCGTAAGTCAGTGGAATACAAATCAAAAGTTCGTAATTGCACTAAACTCCCAACATCATTTGGTCCTCCACCAGAGGTTGGGGATTGGGGACATGTCCCACAAGTTTCTGAGCTCGGGCTTCAGCAGGAAAAGGTTTCTAAAGGAATGAACTTTGTTGGAGGTGAAAGTGCTGCACTGGGTAGGGTACATGATTACTTTTGGAAGAAGGATTTATTAAAAGTGTATAAAGAGACTCGAAATGGAATGTTAGGAGCTGATTATTCTACAAAGTTCTCTCCTTGGCTTGCTTCAGGAAGTCTGTCTCCCCGTTTTATATATGAAGAGGTGAAGAGATATGAGAAGGAAAGACTATCAAATGATTCAACATACTGGGTTTTGTTTGAATTAATATGGAGGGATTACTTCAGATTTCTCTCAATCAAACTAGCAAATTTGCTGTTTCAAGCAGGAGGCCCTCAAAAGGTAAATATTAACTGGAGCCAAGACCAAACCATGTTTGATGCCTGGAGACGAGGGCAAACCGGGTATCCTTTAATTGATGCCAACATGAAAGAACTAGCTGCTACTGGATACATGTCGAATCGAGGACGACAGATTGTGTGTTCTTTTCTTGTTCGAGATATGGGCATCGACTGGCGGATGGGAGCTGAATGGTTTGAGACATGCCTCTTGGATTATGATCCTTGCTCCAACTATGGCAACTGGACATATGGAGCAGGTGTTGGCAATGACCCGAGAGAAGACCGTTACTTCAGCATTCCGAAGCAAGCTCAAAACTATGATCCTGAAGGGGAGTTTGTTGCATACTGGTTACCAGAGTTAAGAGCACTTCCAAGAGAGAAAAGACACTCTCCTGGAATGATGTACTTAAATCCAATCGTAGCTCTCAAACATGGATATACCAAGAAGACTGGTGATTCAAAAACAGCCTTTTCATCAAGAAGAGGCAGACCAGAAGACAATAGACGAAAGCGACACGGCTACTGATTTTCAGGTCATAAGTCACGAAATTGCAACTGAGATGAGTTTGTTTGCTGCATAATATTCTTTATGTAATAAATACATCTGTGAGTAGAACTAGCCTGATCTCACCTGCGCTACTATACTGGGTATGTTGTTGTTGTCTGTTAGTAGAGCTAGCCTTGATCACATTGGGTATCTGGGAGCATGGAAATATGAAGATTGTGAAATTGGCTACTATTA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc08g074270.2.1 | SL2.50ch08:58369206..58374303 | 578 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc08g074270.2 | SL2.50ch08:58368991..58374303 | 5,313 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc08g074270.2.1.1 | SL2.50ch08:58373916..58374303 | 388 | - | 2 |
| exon | exon:Solyc08g074270.2.1.10 | SL2.50ch08:58370089..58370158 | 70 | - | n/a |
| exon | exon:Solyc08g074270.2.1.11 | SL2.50ch08:58369783..58369906 | 124 | - | 2 |
| exon | exon:Solyc08g074270.2.1.12 | SL2.50ch08:58369634..58369683 | 50 | - | n/a |
| exon | exon:Solyc08g074270.2.1.13 | SL2.50ch08:58368991..58369425 | 435 | - | n/a |
| exon | exon:Solyc08g074270.2.1.2 | SL2.50ch08:58372513..58372652 | 140 | - | n/a |
| exon | exon:Solyc08g074270.2.1.3 | SL2.50ch08:58372172..58372396 | 225 | - | n/a |
| exon | exon:Solyc08g074270.2.1.4 | SL2.50ch08:58371943..58372068 | 126 | - | n/a |
| exon | exon:Solyc08g074270.2.1.5 | SL2.50ch08:58371777..58371851 | 75 | - | n/a |
| exon | exon:Solyc08g074270.2.1.6 | SL2.50ch08:58371063..58371179 | 117 | - | n/a |
| exon | exon:Solyc08g074270.2.1.7 | SL2.50ch08:58370922..58370968 | 47 | - | 1 |
| exon | exon:Solyc08g074270.2.1.8 | SL2.50ch08:58370635..58370711 | 77 | - | 2 |
| exon | exon:Solyc08g074270.2.1.9 | SL2.50ch08:58370377..58370452 | 76 | - | 1 |
| intron | intron:Solyc08g074270.2.1.10 | SL2.50ch08:58370159..58370376 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.11 | SL2.50ch08:58369907..58370088 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.12 | SL2.50ch08:58369684..58369782 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.13 | SL2.50ch08:58369426..58369633 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.2 | SL2.50ch08:58372653..58373915 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.3 | SL2.50ch08:58372397..58372512 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.4 | SL2.50ch08:58372069..58372171 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.5 | SL2.50ch08:58371852..58371942 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.6 | SL2.50ch08:58371180..58371776 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.7 | SL2.50ch08:58370969..58371062 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.8 | SL2.50ch08:58370712..58370921 | n/a | - | n/a |
| intron | intron:Solyc08g074270.2.1.9 | SL2.50ch08:58370453..58370634 | n/a | - | n/a |
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