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Expression Template: AFFX-BioB-3_at

Template Basic Information

Template name:	AFFX-BioB-3_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	GenBank: AFFX-BioB-3

Probe Composition (20)

Probe name	Probe type	Template start coord	Template end coord	Spots
AFFX-BioB-3_at:ProbePair0	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair1	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair10	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair11	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair12	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair13	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair14	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair15	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair16	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair17	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair18	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair19	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair2	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair3	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair4	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair5	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair6	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair7	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair8	PM	data not available	data not available	data not available
AFFX-BioB-3_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	141.21	141.21	66.23	0.47
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	152.11	125.96	52.16	0.34
	Gene expression data from Aft red fruit flesh	endocarp	3	3	99.19	105.07	11.71	0.12
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	143.74	145.90	10.28	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	93.65	95.07	17.07	0.18
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	148.80	148.80	66.43	0.45
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	115.25	114.88	13.44	0.12
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	193.78	195.56	108.96	0.56
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	127.72	124.78	8.96	0.07
	Gene expression data from Aft red fruit peel	exocarp	3	3	147.17	160.77	24.91	0.17
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	108.60	108.96	10.48	0.10
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	169.20	166.49	30.58	0.18
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	141.13	142.71	18.77	0.13
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	131.13	131.13	18.33	0.14
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	106.34	111.81	37.85	0.36
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	135.84	135.84	4.37	0.03
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	189.54	192.39	23.14	0.12
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	135.73	135.73	29.48	0.22
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	159.43	159.43	18.56	0.12
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	193.72	197.24	32.12	0.17
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	247.55	240.16	21.03	0.08
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	234.94	231.03	9.42	0.04
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	100.21	100.21	25.43	0.25
	Gene expression data from Micro-Tom root	root	3	3	176.29	181.25	10.37	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	188.043	4e-5	P
	GSM480171 extract 1	94.3789	4e-5	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	125.963	4e-5	P
	GSM480200 extract 1	118.204	4e-5	P
	GSM480202 extract 1	212.175	4e-5	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	106.803	4e-5	P
	GSM480203 extract 1	105.068	4e-5	P
	GSM480205 extract 1	85.7103	4e-5	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	145.903	4e-5	P
	GSM480212 extract 1	132.559	4e-5	P
	GSM480214 extract 1	152.769	4e-5	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	109.971	5e-5	P
	GSM480181 extract 1	75.9253	6e-5	P
	GSM480182 extract 1	95.0673	4e-5	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	101.823	4e-5	P
	GSM480186 extract 1	195.771	4e-5	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	128.875	4e-5	P
	GSM480189 extract 1	114.881	4e-5	P
	GSM480188 extract 1	101.995	4e-5	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	318.289	4e-5	P
	GSM480224 extract 1	238.65	4e-5	P
	GSM480226 extract 1	152.46	4e-5	P
	GSM480227 extract 1	65.7363	4e-5	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	124.778	4e-5	P
	GSM480207 extract 1	137.788	4e-5	P
	GSM480208 extract 1	120.599	4e-5	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	118.425	4e-5	P
	GSM480210 extract 1	160.774	4e-5	P
	GSM480211 extract 1	162.32	4e-5	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	97.9362	4e-5	P
	GSM480219 extract 1	118.896	4e-5	P
	GSM480220 extract 1	108.956	4e-5	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	166.493	4e-5	P
	GSM480221 extract 1	201.042	4e-5	P
	GSM480222 extract 1	140.061	4e-5	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	159.049	4e-5	P
	GSM480191 extract 1	142.714	4e-5	P
	GSM480192 extract 1	121.616	4e-5	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	144.087	4e-5	P
	GSM480196 extract 1	118.169	4e-5	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	141.152	4e-5	P
	GSM480198 extract 1	111.808	4e-5	P
	GSM480199 extract 1	66.048	4e-5	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	132.753	4e-5	P
	GSM480194 extract 1	138.929	4e-5	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	196.894	4e-5	P
	GSM480229 extract 1	187.88	5e-5	P
	GSM480230 extract 1	214.38	4e-5	P
	GSM480231 extract 1	159.007	4e-5	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	114.885	4e-5	P
	GSM480168 extract 1	156.575	4e-5	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	146.301	4e-5	P
	GSM480172 extract 1	172.552	4e-5	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	197.237	4e-5	P
	GSM480174 extract 1	223.94	4e-5	P
	GSM480176 extract 1	159.985	4e-5	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	240.163	4e-5	P
	GSM480178 extract 1	231.206	4e-5	P
	GSM480179 extract 1	271.278	4e-5	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	228.113	4e-5	P
	GSM480215 extract 1	231.034	4e-5	P
	GSM480217 extract 1	245.688	4e-5	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	118.191	4e-5	P
	GSM480184 extract 1	82.2281	4e-5	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	183.241	4e-5	P
	GSM480165 extract 1	164.363	4e-5	P
	GSM480166 extract 1	181.254	4e-5	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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