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Expression Template: AFFX-r2-Ec-bioC-5_at

Template Basic Information

Template name:	AFFX-r2-Ec-bioC-5_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	GenBank: AFFX-r2-Ec-bioC-5

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
AFFX-r2-Ec-bioC-5_at:ProbePair0	PM	data not available	data not available	data not available
AFFX-r2-Ec-bioC-5_at:ProbePair1	PM	data not available	data not available	data not available
AFFX-r2-Ec-bioC-5_at:ProbePair10	PM	data not available	data not available	data not available
AFFX-r2-Ec-bioC-5_at:ProbePair2	PM	data not available	data not available	data not available
AFFX-r2-Ec-bioC-5_at:ProbePair3	PM	data not available	data not available	data not available
AFFX-r2-Ec-bioC-5_at:ProbePair4	PM	data not available	data not available	data not available
AFFX-r2-Ec-bioC-5_at:ProbePair5	PM	data not available	data not available	data not available
AFFX-r2-Ec-bioC-5_at:ProbePair6	PM	data not available	data not available	data not available
AFFX-r2-Ec-bioC-5_at:ProbePair7	PM	data not available	data not available	data not available
AFFX-r2-Ec-bioC-5_at:ProbePair8	PM	data not available	data not available	data not available
AFFX-r2-Ec-bioC-5_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	586.52	586.52	141.32	0.24
	Gene expression data from Aft red fruit flesh	endocarp	3	3	388.46	412.37	43.77	0.11
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	767.44	768.17	29.99	0.04
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	555.84	555.84	147.54	0.27
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	427.01	427.01	76.81	0.18
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	422.97	424.96	40.21	0.10
	Gene expression data from Aft red fruit peel	exocarp	3	3	528.84	513.38	71.85	0.14
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	420.76	412.81	43.97	0.10
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	620.75	610.07	74.26	0.12
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	545.24	526.46	49.90	0.09
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	509.29	509.29	73.52	0.14
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	382.24	385.40	128.74	0.34
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	488.74	488.74	15.52	0.03
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	698.70	701.84	70.68	0.10
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	497.61	497.61	135.55	0.27
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	640.16	640.16	56.33	0.09
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	842.62	872.66	67.78	0.08
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	786.34	761.54	47.45	0.06
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	717.13	661.68	166.45	0.23
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	623.14	628.28	8.95	0.01
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	430.69	450.09	64.82	0.15
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	439.70	404.54	93.04	0.21
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	734.69	764.72	403.81	0.55
	Gene expression data from Micro-Tom root	root	3	3	588.36	564.90	67.06	0.11

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	686.441	2e-4	P
	GSM480171 extract 1	486.588	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	412.369	2e-4	P
	GSM480203 extract 1	415.073	2e-4	P
	GSM480205 extract 1	337.939	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	737.102	2e-4	P
	GSM480216 extract 1	768.166	2e-4	P
	GSM480217 extract 1	797.068	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	451.518	2e-4	P
	GSM480186 extract 1	660.168	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	481.325	2e-4	P
	GSM480184 extract 1	372.702	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	424.955	2e-4	P
	GSM480207 extract 1	462.147	2e-4	P
	GSM480208 extract 1	381.795	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	607.158	2e-4	P
	GSM480209 extract 1	465.973	2e-4	P
	GSM480211 extract 1	513.383	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	381.298	2e-4	P
	GSM480218 extract 1	412.81	2e-4	P
	GSM480220 extract 1	468.159	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	552.412	2e-4	P
	GSM480221 extract 1	699.77	2e-4	P
	GSM480223 extract 1	610.071	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	601.804	2e-4	P
	GSM480192 extract 1	526.463	2e-4	P
	GSM480191 extract 1	507.453	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	561.278	2e-4	P
	GSM480196 extract 1	457.303	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	509.37	2e-4	P
	GSM480198 extract 1	385.402	2e-4	P
	GSM480199 extract 1	251.95	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	477.761	2e-4	P
	GSM480194 extract 1	499.71	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	683.073	2e-4	P
	GSM480229 extract 1	779.944	2e-4	P
	GSM480230 extract 1	720.603	2e-4	P
	GSM480231 extract 1	611.171	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	401.759	2e-4	P
	GSM480168 extract 1	593.454	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	679.986	2e-4	P
	GSM480173 extract 1	600.329	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	890.188	2e-4	P
	GSM480175 extract 1	872.656	2e-4	P
	GSM480176 extract 1	765.018	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	761.545	2e-4	P
	GSM480177 extract 1	756.422	2e-4	P
	GSM480179 extract 1	841.052	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	661.685	2e-4	P
	GSM480201 extract 1	585.475	2e-4	P
	GSM480202 extract 1	904.217	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	612.807	2e-4	P
	GSM480213 extract 1	628.277	2e-4	P
	GSM480212 extract 1	628.34	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	483.594	2e-4	P
	GSM480182 extract 1	358.384	2e-4	P
	GSM480181 extract 1	450.094	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	545.193	2e-4	P
	GSM480188 extract 1	369.367	2e-4	P
	GSM480189 extract 1	404.536	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	1160.57	2e-4	P
	GSM480224 extract 1	951.641	2e-4	P
	GSM480226 extract 1	577.794	2e-4	P
	GSM480227 extract 1	248.765	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	663.993	2e-4	P
	GSM480166 extract 1	564.904	2e-4	P
	GSM480167 extract 1	536.167	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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