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Expression Template: AFFX-r2-TagIN-3_at

Template Basic Information

Template name:	AFFX-r2-TagIN-3_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	GenBank: AFFX-r2-TagIN-3

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
AFFX-r2-TagIN-3_at:ProbePair0	PM	data not available	data not available	data not available
AFFX-r2-TagIN-3_at:ProbePair1	PM	data not available	data not available	data not available
AFFX-r2-TagIN-3_at:ProbePair10	PM	data not available	data not available	data not available
AFFX-r2-TagIN-3_at:ProbePair2	PM	data not available	data not available	data not available
AFFX-r2-TagIN-3_at:ProbePair3	PM	data not available	data not available	data not available
AFFX-r2-TagIN-3_at:ProbePair4	PM	data not available	data not available	data not available
AFFX-r2-TagIN-3_at:ProbePair5	PM	data not available	data not available	data not available
AFFX-r2-TagIN-3_at:ProbePair6	PM	data not available	data not available	data not available
AFFX-r2-TagIN-3_at:ProbePair7	PM	data not available	data not available	data not available
AFFX-r2-TagIN-3_at:ProbePair8	PM	data not available	data not available	data not available
AFFX-r2-TagIN-3_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	0.52	0.52	0.09	0.17
	Gene expression data from Aft red fruit flesh	endocarp	3	3	0.46	0.46	0.01	0.03
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	0.51	0.50	0.10	0.20
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1.37	0.86	0.93	0.67
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	0.54	0.53	0.04	0.07
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	0.63	0.69	0.24	0.38
	Gene expression data from Aft red fruit peel	exocarp	3	3	0.79	0.39	0.80	1.01
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	0.40	0.37	0.08	0.19
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	0.70	0.72	0.21	0.31
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	0.96	1.01	0.13	0.14
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	0.50	0.50	0.12	0.23
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	0.57	0.59	0.07	0.12
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	0.69	0.69	0.40	0.58
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	0.66	0.63	0.12	0.18
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	0.33	0.33	0.03	0.09
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	0.56	0.56	0.30	0.53
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1.39	1.45	0.38	0.28
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	0.78	0.60	0.43	0.56
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	0.63	0.56	0.15	0.24
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	0.79	0.76	0.36	0.45
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	0.56	0.56	0.09	0.15
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	0.72	0.72	0.22	0.31
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	0.60	0.54	0.18	0.31
	Gene expression data from Micro-Tom root	root	3	3	0.63	0.44	0.46	0.73

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	0.578702	0.986	A
	GSM480170 extract 1	0.457186	0.962	A
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	0.45741	0.997	A
	GSM480204 extract 1	0.479776	0.996	A
	GSM480203 extract 1	0.451284	0.994	A
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	0.611548	0.994	A
	GSM480212 extract 1	0.503161	0.996	A
	GSM480214 extract 1	0.405345	0.991	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	0.857918	0.986	A
	GSM480180 extract 1	2.44115	0.870	A
	GSM480181 extract 1	0.817351	0.989	A
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	0.508939	0.989	A
	GSM480187 extract 1	0.582878	0.989	A
	GSM480188 extract 1	0.534727	0.986	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	0.362125	0.970	A
	GSM480207 extract 1	0.692259	0.981	A
	GSM480208 extract 1	0.825061	0.962	A
Gene expression data from Aft red fruit peel	GSM480209 extract 1	0.387807	0.970	A
	GSM480210 extract 1	0.273949	0.999	A
	GSM480211 extract 1	1.71802	0.805	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	0.343872	0.989	A
	GSM480219 extract 1	0.367146	0.986	A
	GSM480220 extract 1	0.487213	0.999	A
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	0.717825	0.996	A
	GSM480222 extract 1	0.896394	0.944	A
	GSM480223 extract 1	0.472969	0.962	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1.01212	0.932	A
	GSM480190 extract 1	1.05504	0.981	A
	GSM480192 extract 1	0.806482	0.986	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	0.582934	0.989	A
	GSM480196 extract 1	0.418144	0.997	A
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	0.618629	0.998	A
	GSM480197 extract 1	0.588861	0.989	A
	GSM480198 extract 1	0.492295	0.976	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	0.410998	0.999	A
	GSM480193 extract 1	0.976748	0.962	A
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	0.561904	0.994	A
	GSM480229 extract 1	0.815347	0.992	A
	GSM480228 extract 1	0.577729	0.976	A
	GSM480230 extract 1	0.683716	0.932	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	0.349926	0.986	A
	GSM480168 extract 1	0.308293	0.989	A
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	0.348119	0.976	A
	GSM480173 extract 1	0.765984	0.994	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	1.44878	0.954	A
	GSM480176 extract 1	0.979125	0.962	A
	GSM480175 extract 1	1.73996	0.905	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1.26957	0.850	A
	GSM480178 extract 1	0.601676	0.986	A
	GSM480179 extract 1	0.460337	0.981	A
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	0.799719	0.996	A
	GSM480200 extract 1	0.562546	0.998	A
	GSM480202 extract 1	0.516009	0.981	A
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	0.755468	0.981	A
	GSM480215 extract 1	0.452691	0.992	A
	GSM480216 extract 1	1.16931	0.962	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	0.618623	0.997	A
	GSM480186 extract 1	0.497809	0.981	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	0.873324	0.981	A
	GSM480184 extract 1	0.560693	0.989	A
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	0.497937	0.998	A
	GSM480224 extract 1	0.456727	0.994	A
	GSM480225 extract 1	0.866325	0.999	A
	GSM480226 extract 1	0.583318	0.929	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	1.15944	0.888	A
	GSM480166 extract 1	0.442397	0.997	A
	GSM480167 extract 1	0.295599	0.962	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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