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Expression Template: AFFX-Le_17SrRNA_at

Template Basic Information

Template name:	AFFX-Le_17SrRNA_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	data not available

Probe Composition (16)

Probe name	Probe type	Template start coord	Template end coord	Spots
AFFX-Le_17SrRNA_at:ProbePair0	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair1	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair10	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair11	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair12	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair13	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair14	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair15	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair2	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair3	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair4	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair5	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair6	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair7	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair8	PM	data not available	data not available	data not available
AFFX-Le_17SrRNA_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	29.28	29.28	7.40	0.25
	Gene expression data from Aft red fruit flesh	endocarp	3	3	25.08	24.93	1.30	0.05
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	28.93	31.79	7.78	0.27
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	47.64	47.19	5.46	0.11
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	50.21	46.97	18.18	0.36
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	41.57	41.57	38.52	0.93
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	23.86	23.86	4.71	0.20
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	13.46	13.30	2.48	0.18
	Gene expression data from Aft red fruit peel	exocarp	3	3	10.83	11.51	5.09	0.47
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	15.08	15.26	2.26	0.15
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	18.42	17.43	3.44	0.19
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	55.15	64.74	24.52	0.44
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	34.92	34.92	20.58	0.59
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	63.99	42.28	43.06	0.67
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	42.80	42.80	34.70	0.81
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	60.19	48.34	30.82	0.51
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	28.61	28.61	10.26	0.36
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	38.80	38.80	0.07	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	38.71	37.10	3.43	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	38.27	36.06	8.58	0.22
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	41.56	44.41	8.18	0.20
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	50.96	57.76	22.82	0.45
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	46.58	48.89	19.63	0.42
	Gene expression data from Micro-Tom root	root	3	3	22.27	23.95	3.40	0.15

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	34.5124	0.002	P
	GSM480171 extract 1	24.0524	0.015	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	24.9265	0.005	P
	GSM480203 extract 1	26.4541	6e-4	P
	GSM480205 extract 1	23.8633	0.001	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	20.1252	0.005	P
	GSM480214 extract 1	31.7919	6e-4	P
	GSM480213 extract 1	34.8724	0.002	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	53.3048	4e-4	P
	GSM480216 extract 1	42.4107	7e-4	P
	GSM480217 extract 1	47.1933	0.001	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	33.8592	0.004	P
	GSM480181 extract 1	69.7928	4e-4	P
	GSM480182 extract 1	46.9701	0.001	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	14.3361	0.074	A
	GSM480186 extract 1	68.8104	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	20.5258	0.006	P
	GSM480184 extract 1	27.1876	0.002	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	16.0075	0.008	P
	GSM480208 extract 1	11.0636	0.031	P
	GSM480207 extract 1	13.2951	0.054	M
Gene expression data from Aft red fruit peel	GSM480211 extract 1	15.5394	0.015	P
	GSM480210 extract 1	5.43094	0.002	P
	GSM480209 extract 1	11.5054	0.017	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	17.2492	0.003	P
	GSM480219 extract 1	12.7368	0.007	P
	GSM480220 extract 1	15.2556	0.031	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	17.427	0.001	P
	GSM480222 extract 1	22.2516	0.004	P
	GSM480223 extract 1	15.5863	0.028	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	27.2823	0.006	P
	GSM480192 extract 1	64.7365	1e-3	P
	GSM480191 extract 1	73.4236	4e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	20.3716	0.004	P
	GSM480196 extract 1	49.4731	3e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	42.2802	8e-4	P
	GSM480199 extract 1	36.0976	1e-3	P
	GSM480197 extract 1	113.582	3e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	67.3377	6e-4	P
	GSM480193 extract 1	18.2647	0.002	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	39.2419	7e-4	P
	GSM480230 extract 1	104.815	3e-4	P
	GSM480229 extract 1	56.6768	0.001	P
	GSM480231 extract 1	40.007	8e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	35.8683	1e-3	P
	GSM480168 extract 1	21.3565	0.004	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	38.8437	8e-4	P
	GSM480173 extract 1	38.7465	3e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	42.6545	0.002	P
	GSM480175 extract 1	37.095	8e-4	P
	GSM480176 extract 1	36.3925	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	36.0635	7e-4	P
	GSM480178 extract 1	31.0088	0.002	P
	GSM480179 extract 1	47.7357	4e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	32.3358	0.004	P
	GSM480201 extract 1	44.4065	0.001	P
	GSM480202 extract 1	47.943	6e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	57.7601	0.001	P
	GSM480188 extract 1	69.6075	3e-4	P
	GSM480187 extract 1	25.5051	0.006	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	42.408	0.002	P
	GSM480224 extract 1	55.3718	5e-4	P
	GSM480225 extract 1	67.1848	0.002	P
	GSM480227 extract 1	21.3427	0.002	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	23.9458	0.003	P
	GSM480166 extract 1	24.511	0.017	P
	GSM480165 extract 1	18.3522	0.006	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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