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Expression Template: RPTR-Les-A00196-1_s_at

Template Basic Information

Template name:	RPTR-Les-A00196-1_s_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	GenBank: RPTR-Les-A00196-1

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
RPTR-Les-A00196-1_s_at:ProbePair0	PM	data not available	data not available	data not available
RPTR-Les-A00196-1_s_at:ProbePair1	PM	data not available	data not available	data not available
RPTR-Les-A00196-1_s_at:ProbePair10	PM	data not available	data not available	data not available
RPTR-Les-A00196-1_s_at:ProbePair2	PM	data not available	data not available	data not available
RPTR-Les-A00196-1_s_at:ProbePair3	PM	data not available	data not available	data not available
RPTR-Les-A00196-1_s_at:ProbePair4	PM	data not available	data not available	data not available
RPTR-Les-A00196-1_s_at:ProbePair5	PM	data not available	data not available	data not available
RPTR-Les-A00196-1_s_at:ProbePair6	PM	data not available	data not available	data not available
RPTR-Les-A00196-1_s_at:ProbePair7	PM	data not available	data not available	data not available
RPTR-Les-A00196-1_s_at:ProbePair8	PM	data not available	data not available	data not available
RPTR-Les-A00196-1_s_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1.96	1.96	0.62	0.32
	Gene expression data from Aft red fruit flesh	endocarp	3	3	0.42	0.40	0.10	0.23
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	3.86	1.71	4.76	1.23
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	4.95	5.83	2.61	0.53
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	0.70	0.70	0.11	0.16
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	0.77	0.71	0.26	0.34
	Gene expression data from Aft red fruit peel	exocarp	3	3	1.25	0.77	1.01	0.81
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2.76	2.19	2.25	0.81
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	0.71	0.41	0.54	0.76
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	3.22	1.25	4.07	1.26
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	0.87	0.87	0.14	0.16
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2.55	1.59	1.73	0.68
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2.11	2.11	1.22	0.58
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	5.47	4.95	4.94	0.90
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	6.18	6.18	0.07	0.01
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	0.36	0.36	0.04	0.10
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	0.77	0.61	0.38	0.50
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2.99	1.75	2.94	0.98
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	0.99	0.87	0.58	0.58
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	0.86	0.69	0.56	0.66
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	5.64	5.75	2.59	0.46
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	2.40	2.40	1.86	0.77
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1.50	1.44	1.04	0.69
	Gene expression data from Micro-Tom root	root	3	3	2.57	1.20	2.65	1.03

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	2.39666	0.726	A
	GSM480171 extract 1	1.52189	0.829	A
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	0.527466	0.888	A
	GSM480203 extract 1	0.39888	0.919	A
	GSM480205 extract 1	0.337066	0.992	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1.71385	0.601	A
	GSM480181 extract 1	9.31932	0.466	A
	GSM480182 extract 1	0.560634	0.989	A
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	7.00654	0.334	A
	GSM480187 extract 1	2.01898	0.696	A
	GSM480188 extract 1	5.83439	0.399	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	0.623771	0.850	A
	GSM480184 extract 1	0.77936	0.970	A
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	0.71111	0.932	A
	GSM480206 extract 1	1.06305	0.781	A
	GSM480207 extract 1	0.546715	0.888	A
Gene expression data from Aft red fruit peel	GSM480211 extract 1	0.57696	0.870	A
	GSM480209 extract 1	0.767687	0.666	A
	GSM480210 extract 1	2.41938	0.696	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	0.857685	0.905	A
	GSM480219 extract 1	5.24979	0.568	A
	GSM480220 extract 1	2.18649	0.601	A
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	0.389796	0.933	A
	GSM480221 extract 1	1.34101	0.805	A
	GSM480223 extract 1	0.410905	0.930	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	7.9009	0.399	A
	GSM480190 extract 1	0.511313	0.989	A
	GSM480192 extract 1	1.25002	0.781	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	0.766619	0.850	A
	GSM480196 extract 1	0.966586	0.666	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1.59347	0.781	A
	GSM480199 extract 1	4.55347	0.534	A
	GSM480198 extract 1	1.51346	0.781	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1.2499	0.805	A
	GSM480194 extract 1	2.97021	0.726	A
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	11.354	0.534	A
	GSM480228 extract 1	7.65666	0.568	A
	GSM480229 extract 1	2.24306	0.568	A
	GSM480231 extract 1	0.638006	0.954	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	6.22825	0.334	A
	GSM480169 extract 1	6.13548	0.534	A
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	0.383192	0.997	A
	GSM480172 extract 1	0.330909	0.905	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	0.485462	0.954	A
	GSM480175 extract 1	1.20414	0.726	A
	GSM480176 extract 1	0.607705	0.870	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	6.35409	0.334	A
	GSM480178 extract 1	0.876643	0.805	A
	GSM480179 extract 1	1.74962	0.666	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	0.874244	0.994	A
	GSM480201 extract 1	0.48314	0.992	A
	GSM480202 extract 1	1.61878	0.534	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	0.688999	0.954	A
	GSM480214 extract 1	1.48766	0.754	A
	GSM480213 extract 1	0.397235	0.981	A
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	2.99515	0.634	A
	GSM480215 extract 1	8.17863	0.334	A
	GSM480217 extract 1	5.75041	0.568	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	1.08964	0.754	A
	GSM480185 extract 1	3.72022	0.500	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	0.525266	0.994	A
	GSM480225 extract 1	2.18196	0.905	A
	GSM480226 extract 1	0.701873	0.850	A
	GSM480227 extract 1	2.58324	0.870	A
Gene expression data from Micro-Tom root	GSM480167 extract 1	0.876419	0.829	A
	GSM480165 extract 1	1.1978	0.534	A
	GSM480166 extract 1	5.62564	0.568	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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