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Expression Template: RPTR-Les-J01347-2_at

Template Basic Information

Template name:	RPTR-Les-J01347-2_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	GenBank: RPTR-Les-J01347-2

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
RPTR-Les-J01347-2_at:ProbePair0	PM	data not available	data not available	data not available
RPTR-Les-J01347-2_at:ProbePair1	PM	data not available	data not available	data not available
RPTR-Les-J01347-2_at:ProbePair10	PM	data not available	data not available	data not available
RPTR-Les-J01347-2_at:ProbePair2	PM	data not available	data not available	data not available
RPTR-Les-J01347-2_at:ProbePair3	PM	data not available	data not available	data not available
RPTR-Les-J01347-2_at:ProbePair4	PM	data not available	data not available	data not available
RPTR-Les-J01347-2_at:ProbePair5	PM	data not available	data not available	data not available
RPTR-Les-J01347-2_at:ProbePair6	PM	data not available	data not available	data not available
RPTR-Les-J01347-2_at:ProbePair7	PM	data not available	data not available	data not available
RPTR-Les-J01347-2_at:ProbePair8	PM	data not available	data not available	data not available
RPTR-Les-J01347-2_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	5.22	5.22	5.78	1.11
	Gene expression data from Aft red fruit flesh	endocarp	3	3	6.33	7.36	3.89	0.61
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	6.14	7.04	3.97	0.65
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	9.36	9.36	1.46	0.16
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1.53	1.53	1.17	0.77
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	6.04	5.88	0.55	0.09
	Gene expression data from Aft red fruit peel	exocarp	3	3	5.11	3.53	2.91	0.57
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	3.26	2.50	2.67	0.82
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	6.80	9.17	4.84	0.71
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	3.22	2.95	2.43	0.75
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	5.55	5.55	5.23	0.94
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	4.14	1.52	4.56	1.10
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2.26	2.26	2.43	1.08
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	6.09	4.64	5.63	0.92
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1.57	1.57	1.54	0.98
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	3.69	3.69	0.59	0.16
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	8.97	7.48	5.43	0.61
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	5.56	7.51	4.27	0.77
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	3.30	2.31	2.06	0.63
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	3.43	0.87	4.54	1.32
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	6.38	6.95	5.57	0.87
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	2.57	2.57	2.18	0.85
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1.96	0.97	2.36	1.20
	Gene expression data from Micro-Tom root	root	3	3	4.39	5.47	2.91	0.66

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	1.13443	0.805	A
	GSM480171 extract 1	9.30289	0.534	A
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	7.35847	0.304	A
	GSM480203 extract 1	2.03221	0.399	A
	GSM480205 extract 1	9.5964	0.130	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	7.04144	0.304	A
	GSM480213 extract 1	9.58581	0.399	A
	GSM480214 extract 1	1.79875	0.845	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	8.32257	0.500	A
	GSM480186 extract 1	10.3905	0.334	A
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	0.351666	0.981	A
	GSM480188 extract 1	1.52627	0.754	A
	GSM480189 extract 1	2.70031	0.534	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	5.88146	0.334	A
	GSM480207 extract 1	6.64269	0.334	A
	GSM480208 extract 1	5.58633	0.466	A
Gene expression data from Aft red fruit peel	GSM480211 extract 1	3.53086	0.366	A
	GSM480209 extract 1	8.46759	0.112	A
	GSM480210 extract 1	3.33793	0.246	A
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	2.50231	0.432	A
	GSM480219 extract 1	1.05323	0.688	A
	GSM480218 extract 1	6.23569	0.366	A
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	9.16721	0.568	A
	GSM480221 extract 1	10.0063	0.304	A
	GSM480223 extract 1	1.22755	0.870	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	2.95372	0.696	A
	GSM480192 extract 1	0.933374	0.850	A
	GSM480191 extract 1	5.7681	0.534	A
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	9.24149	0.399	A
	GSM480195 extract 1	1.84959	0.726	A
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	1.4971	0.888	A
	GSM480197 extract 1	9.40343	0.568	A
	GSM480199 extract 1	1.52431	0.666	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	3.98081	0.568	A
	GSM480194 extract 1	0.539889	0.850	A
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	1.54617	0.870	A
	GSM480230 extract 1	1.92407	0.726	A
	GSM480231 extract 1	7.35822	0.432	A
	GSM480229 extract 1	13.5444	0.432	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	0.480268	0.905	A
	GSM480168 extract 1	2.65453	0.696	A
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	4.10363	0.399	A
	GSM480173 extract 1	3.27568	0.726	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	4.44222	0.366	A
	GSM480175 extract 1	7.47866	0.634	A
	GSM480176 extract 1	14.999	0.112	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	0.665661	0.919	A
	GSM480177 extract 1	8.50776	0.526	A
	GSM480178 extract 1	7.51191	0.500	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	2.31456	0.568	A
	GSM480202 extract 1	1.91133	0.634	A
	GSM480201 extract 1	5.66671	0.399	A
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	0.741797	0.905	A
	GSM480215 extract 1	8.67818	0.500	A
	GSM480217 extract 1	0.873202	0.829	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	6.9542	0.399	A
	GSM480182 extract 1	11.6381	0.171	A
	GSM480181 extract 1	0.534709	0.954	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	4.10695	0.634	A
	GSM480184 extract 1	1.03046	0.829	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	0.847326	0.850	A
	GSM480227 extract 1	1.10096	0.805	A
	GSM480225 extract 1	0.412003	0.954	A
	GSM480226 extract 1	5.47	0.500	A
Gene expression data from Micro-Tom root	GSM480167 extract 1	5.46633	0.195	A
	GSM480165 extract 1	1.09485	0.805	A
	GSM480166 extract 1	6.59645	0.399	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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