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Expression Template: RPTR-Les-U89963-1_x_at

Template Basic Information

Template name:	RPTR-Les-U89963-1_x_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	GenBank: RPTR-Les-U89963-1

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
RPTR-Les-U89963-1_x_at:ProbePair0	PM	data not available	data not available	data not available
RPTR-Les-U89963-1_x_at:ProbePair2	PM	data not available	data not available	data not available
RPTR-Les-U89963-1_x_at:ProbePair3	PM	data not available	data not available	data not available
RPTR-Les-U89963-1_x_at:ProbePair4	PM	data not available	data not available	data not available
RPTR-Les-U89963-1_x_at:ProbePair5	PM	data not available	data not available	data not available
RPTR-Les-U89963-1_x_at:ProbePair6	PM	data not available	data not available	data not available
RPTR-Les-U89963-1_x_at:ProbePair7	PM	data not available	data not available	data not available
RPTR-Les-U89963-1_x_at:ProbePair8	PM	data not available	data not available	data not available
RPTR-Les-U89963-1_x_at:ProbePair9	PM	data not available	data not available	data not available
RPTR-Les-U89963-1_x_at:ProbePair1	PM	data not available	data not available	data not available
RPTR-Les-U89963-1_x_at:ProbePair10	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2.71	2.71	3.20	1.18
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	2.30	0.93	3.16	1.37
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	3.13	1.90	2.26	0.72
	Gene expression data from Aft red fruit peel	exocarp	3	3	1.88	0.88	2.38	1.27
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	3.51	4.83	2.66	0.76
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	0.57	0.54	0.09	0.16
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2.53	2.04	1.91	0.75
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	3.10	3.10	3.42	1.10
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3.08	2.36	3.05	0.99
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	3.85	3.85	3.75	0.97
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2.81	2.20	2.84	1.01
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	3.54	3.54	3.20	0.91
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	0.42	0.42	0.06	0.13
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	6.66	9.01	5.37	0.81
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1.53	0.68	1.64	1.07
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	4.14	4.37	2.55	0.61
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	2.74	3.93	2.09	0.76
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1.81	1.28	1.57	0.86
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1.74	1.50	0.55	0.32
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	2.70	1.50	2.22	0.82
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	2.78	2.78	2.36	0.85
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	6.80	9.13	5.13	0.75
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	0.41	0.41	0.01	0.02
	Gene expression data from Micro-Tom root	root	3	3	3.67	4.16	2.76	0.75

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	0.442809	0.781	A
	GSM480171 extract 1	4.96881	0.432	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	1.15885	0.781	A
	GSM480225 extract 1	0.699376	0.976	A
	GSM480227 extract 1	7.00654	0.568	A
	GSM480226 extract 1	0.330586	0.970	A
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	1.75426	0.601	A
	GSM480206 extract 1	1.90437	0.601	A
	GSM480208 extract 1	5.74043	0.304	A
Gene expression data from Aft red fruit peel	GSM480209 extract 1	4.59233	0.432	A
	GSM480210 extract 1	0.876015	0.696	A
	GSM480211 extract 1	0.158281	0.829	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	4.83072	0.334	A
	GSM480219 extract 1	0.446653	0.658	A
	GSM480220 extract 1	5.25714	0.366	A
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	0.53951	0.905	A
	GSM480221 extract 1	0.503277	0.919	A
	GSM480223 extract 1	0.678755	0.888	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	4.64428	0.568	A
	GSM480190 extract 1	2.03818	0.726	A
	GSM480192 extract 1	0.921357	0.870	A
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	5.52185	0.171	A
	GSM480195 extract 1	0.682312	0.870	A
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	0.459763	0.954	A
	GSM480197 extract 1	2.36023	0.696	A
	GSM480198 extract 1	6.42596	0.334	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	6.50152	0.432	A
	GSM480194 extract 1	1.19902	0.799	A
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	0.32051	0.919	A
	GSM480228 extract 1	3.49211	0.366	A
	GSM480229 extract 1	6.53655	0.366	A
	GSM480230 extract 1	0.905832	0.944	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	1.27264	0.568	A
	GSM480168 extract 1	5.80361	0.150	A
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	0.380793	0.905	A
	GSM480173 extract 1	0.461144	0.888	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	9.00532	0.399	A
	GSM480175 extract 1	10.4647	0.500	A
	GSM480176 extract 1	0.515162	0.954	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	0.486436	0.888	A
	GSM480179 extract 1	0.678127	0.994	A
	GSM480178 extract 1	3.42332	0.696	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	6.5659	0.466	A
	GSM480201 extract 1	4.37337	0.466	A
	GSM480202 extract 1	1.48855	0.568	A
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	3.96049	0.754	A
	GSM480203 extract 1	0.332429	0.970	A
	GSM480204 extract 1	3.92836	0.666	A
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	1.28083	0.726	A
	GSM480212 extract 1	3.57885	0.781	A
	GSM480214 extract 1	0.585049	0.870	A
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	2.36974	0.805	A
	GSM480215 extract 1	1.34304	0.696	A
	GSM480216 extract 1	1.49713	0.696	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	5.25555	0.432	A
	GSM480181 extract 1	1.49951	0.805	A
	GSM480182 extract 1	1.34051	0.466	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	1.10903	0.568	A
	GSM480185 extract 1	4.45054	0.634	A
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	9.12957	0.334	A
	GSM480187 extract 1	10.3626	0.150	A
	GSM480189 extract 1	0.920044	0.919	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	0.419911	0.870	A
	GSM480184 extract 1	0.407834	0.781	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	4.16361	0.634	A
	GSM480166 extract 1	0.696444	0.774	A
	GSM480167 extract 1	6.15392	0.366	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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