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Expression Template: Les.3598.1.S1_at

Template Basic Information

Template name:	Les.3598.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U568299
External db links:	GenBank: U39059.1

Annotations for unigene SGN-U568299 (manual: 0 | blast: 3 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|1709205\|sp\|P54928\|IMP3_SOLLC	538	3e-151	100	798 bp (69.3%)	1
Description:	Inositol
arabidopsis	blastx	At3G02870.1	423	9e-119	76.32	798 bp (69.3%)	1
Description:	Symbols: VTC4 \| VTC4; 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol ph&hellip
swissprot	blastx	P54928	538	2e-152	100	798 bp (69.3%)	1
Description:	Inositol monophosphatase 3 OS=Solanum lycopersicum GN=IMP3 PE=2 SV=1

GO Terms Annotations

GO:0004437inositol or phosphatidylinositol phosphatase activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3598.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3598.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3598.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3598.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3598.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3598.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3598.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3598.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3598.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3598.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3598.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	437.08	437.08	28.70	0.07
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	234.56	246.28	34.89	0.15
	Gene expression data from Aft red fruit flesh	endocarp	3	3	882.35	894.87	34.22	0.04
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	436.20	433.43	32.54	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	479.45	512.78	108.43	0.23
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	921.03	921.03	72.14	0.08
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	696.35	731.82	200.43	0.29
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	702.30	702.30	117.81	0.17
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	720.70	732.86	68.48	0.10
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	161.63	170.96	24.20	0.15
	Gene expression data from Aft red fruit peel	exocarp	3	3	603.15	599.37	28.81	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	212.27	216.50	18.57	0.09
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	531.87	534.40	10.37	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	329.98	318.84	33.55	0.10
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	820.88	820.88	101.41	0.12
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	655.16	686.56	122.25	0.19
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	679.29	679.29	116.28	0.17
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	709.60	698.16	49.54	0.07
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	221.28	221.28	11.99	0.05
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	311.15	311.15	8.64	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	404.43	453.40	88.22	0.22
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	400.57	414.71	55.91	0.14
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	274.81	282.07	16.43	0.06
	Gene expression data from Micro-Tom root	root	3	3	310.23	314.65	13.27	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	416.784	2e-4	P
	GSM480170 extract 1	457.376	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	262.095	2e-4	P
	GSM480201 extract 1	246.276	2e-4	P
	GSM480202 extract 1	195.324	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	843.629	2e-4	P
	GSM480204 extract 1	908.549	2e-4	P
	GSM480205 extract 1	894.867	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	470.041	2e-4	P
	GSM480215 extract 1	405.128	2e-4	P
	GSM480217 extract 1	433.434	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	358.259	2e-4	P
	GSM480181 extract 1	512.781	2e-4	P
	GSM480182 extract 1	567.297	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	870.016	2e-4	P
	GSM480186 extract 1	972.043	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	480.546	2e-4	P
	GSM480189 extract 1	731.819	2e-4	P
	GSM480188 extract 1	876.677	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	785.605	2e-4	P
	GSM480183 extract 1	618.99	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	627.019	2e-4	P
	GSM480224 extract 1	742.623	2e-4	P
	GSM480226 extract 1	723.106	2e-4	P
	GSM480227 extract 1	790.034	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	134.157	2e-4	P
	GSM480206 extract 1	179.772	2e-4	P
	GSM480208 extract 1	170.962	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	599.367	2e-4	P
	GSM480209 extract 1	633.665	2e-4	P
	GSM480210 extract 1	576.423	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	216.501	2e-4	P
	GSM480220 extract 1	191.952	2e-4	P
	GSM480219 extract 1	228.362	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	534.398	2e-4	P
	GSM480221 extract 1	520.468	2e-4	P
	GSM480223 extract 1	540.748	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	303.426	2e-4	P
	GSM480191 extract 1	367.687	2e-4	P
	GSM480192 extract 1	318.839	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	749.177	2e-4	P
	GSM480196 extract 1	892.59	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	520.277	2e-4	P
	GSM480198 extract 1	758.647	2e-4	P
	GSM480199 extract 1	686.555	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	597.07	2e-4	P
	GSM480194 extract 1	761.514	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	700.556	2e-4	P
	GSM480230 extract 1	662.62	2e-4	P
	GSM480228 extract 1	695.761	2e-4	P
	GSM480231 extract 1	779.467	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	212.809	2e-4	P
	GSM480169 extract 1	229.761	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	317.261	2e-4	P
	GSM480173 extract 1	305.042	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	453.401	2e-4	P
	GSM480175 extract 1	457.304	2e-4	P
	GSM480176 extract 1	302.588	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	414.707	2e-4	P
	GSM480179 extract 1	448.065	2e-4	P
	GSM480177 extract 1	338.948	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	256.003	2e-4	P
	GSM480212 extract 1	286.352	2e-4	P
	GSM480213 extract 1	282.074	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	320.731	2e-4	P
	GSM480166 extract 1	295.316	2e-4	P
	GSM480167 extract 1	314.646	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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