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Expression Template: Les.4537.1.S1_at

Template Basic Information

Template name:	Les.4537.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U583385
External db links:	GenBank: AY425708.1

Annotations for unigene SGN-U583385 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEN-13-P22, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "PABA synthase, para-aminobenzoate synthase/glutamine amidotransferase" Annotation Keywords: other; vitamin biosynthesis; vitamin B biosynthesis; folate biosynthesis; fruit quallity

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|40218381\|gb\|AAR83121.1\|	1778		100	2658 bp (83.1%)	2
Description:	aminodeoxychorismate synthase/glutamine amidotransferase [Solanum lycopersicum]
arabidopsis	blastx	At2G28880.1	1041		61.75	2568 bp (80.3%)	2
Description:	Symbols: EMB1997 \| EMB1997 (EMBRYO DEFECTIVE 1997); catalytic/ ligase/ oxo-acid-lyase \| chr2:1&hellip
swissprot	blastx	P32483	456	3e-127	38.18	2421 bp (75.7%)	2
Description:	Para-aminobenzoate synthase OS=Streptomyces griseus GN=pab PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4537.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4537.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4537.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4537.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4537.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4537.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4537.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4537.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4537.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4537.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4537.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	57.79	57.79	7.40	0.13
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	103.83	101.52	10.74	0.10
	Gene expression data from Aft red fruit flesh	endocarp	3	3	49.05	51.42	5.55	0.11
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	105.66	93.53	21.38	0.20
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	81.60	83.77	12.42	0.15
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	176.59	170.99	34.25	0.19
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	76.32	78.05	5.10	0.07
	Gene expression data from Aft red fruit peel	exocarp	3	3	106.29	105.56	22.06	0.21
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	81.36	87.50	12.30	0.15
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	43.90	44.78	7.67	0.17
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	92.43	86.93	29.99	0.32
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	64.74	64.74	24.03	0.37
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	54.80	54.50	15.60	0.28
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	71.27	71.27	11.54	0.16
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	174.14	170.29	42.88	0.25
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	59.32	59.32	14.18	0.24
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	87.89	87.89	4.78	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	58.91	61.98	6.82	0.12
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	89.42	72.56	45.68	0.51
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	131.50	139.60	18.98	0.14
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	42.26	43.08	6.87	0.16
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	124.55	124.55	54.50	0.44
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	90.64	90.64	10.43	0.12
	Gene expression data from Micro-Tom root	root	3	3	54.63	56.17	7.00	0.13

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	63.027	0.002	P
	GSM480170 extract 1	52.5561	7e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	115.537	2e-4	P
	GSM480200 extract 1	101.524	2e-4	P
	GSM480202 extract 1	94.4216	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	42.7104	7e-4	P
	GSM480204 extract 1	53.0255	2e-4	P
	GSM480205 extract 1	51.4182	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	93.0957	2e-4	P
	GSM480182 extract 1	93.5278	2e-4	P
	GSM480180 extract 1	130.347	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	68.2423	2e-4	P
	GSM480189 extract 1	83.7736	2e-4	P
	GSM480188 extract 1	92.794	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	153.787	2e-4	P
	GSM480224 extract 1	144.75	2e-4	P
	GSM480227 extract 1	219.62	2e-4	P
	GSM480226 extract 1	188.191	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	80.3321	2e-4	P
	GSM480206 extract 1	78.0473	2e-4	P
	GSM480208 extract 1	70.5874	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	128.709	2e-4	P
	GSM480210 extract 1	84.6075	2e-4	P
	GSM480211 extract 1	105.558	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	67.199	2e-4	P
	GSM480219 extract 1	87.4991	2e-4	P
	GSM480220 extract 1	89.388	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	51.095	7e-4	P
	GSM480223 extract 1	44.7805	2e-4	P
	GSM480221 extract 1	35.8319	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	65.5754	2e-4	P
	GSM480190 extract 1	124.79	2e-4	P
	GSM480192 extract 1	86.9272	0.001	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	81.7265	2e-4	P
	GSM480196 extract 1	47.7457	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	54.501	2e-4	P
	GSM480197 extract 1	39.3472	2e-4	P
	GSM480198 extract 1	70.5484	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	79.4288	2e-4	P
	GSM480194 extract 1	63.1069	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	160.174	2e-4	P
	GSM480228 extract 1	180.41	2e-4	P
	GSM480230 extract 1	126.743	2e-4	P
	GSM480231 extract 1	229.236	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	69.3509	2e-4	P
	GSM480169 extract 1	49.2903	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	84.5065	0.002	P
	GSM480172 extract 1	91.272	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	61.9823	2e-4	P
	GSM480174 extract 1	63.656	0.001	P
	GSM480175 extract 1	51.0992	0.006	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	72.5633	2e-4	P
	GSM480179 extract 1	54.5632	2e-4	P
	GSM480177 extract 1	141.135	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	109.813	2e-4	P
	GSM480212 extract 1	145.098	2e-4	P
	GSM480213 extract 1	139.601	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	43.0832	0.001	P
	GSM480215 extract 1	48.6854	2e-4	P
	GSM480216 extract 1	35.0171	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	163.085	2e-4	P
	GSM480186 extract 1	86.0096	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	83.2614	2e-4	P
	GSM480184 extract 1	98.0123	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	46.9873	2e-4	P
	GSM480165 extract 1	60.7353	2e-4	P
	GSM480166 extract 1	56.1666	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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