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Expression Template: Les.4456.1.S1_at

Template Basic Information

Template name:	Les.4456.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581239
External db links:	GenBank: U67131.1

Annotations for unigene SGN-U581239 (manual: 6 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEG-24-N16, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: heat shock protein Annotation Keywords: stress responses; temperature stress; heat stress; heat shock protein

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|2495334\|sp\|Q95661\|HS21C_SOLLC	473	5e-131	100	705 bp (22.2%)	-2
Description:	RecName:
arabidopsis	blastx	At1G32790.1	407	2e-113	74.28	816 bp (25.7%)	2
Description:	Symbols: CID11 \| CID11; RNA binding / protein binding \| chr1:11875154-11877168 REVERSE
swissprot	blastx	Q95661	473	3e-132	100	705 bp (22.2%)	-2
Description:	Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4456.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4456.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4456.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4456.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4456.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4456.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4456.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4456.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4456.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4456.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4456.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	392.54	392.54	52.23	0.13
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	622.66	633.76	26.62	0.04
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	884.71	821.36	111.33	0.13
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	778.29	778.29	193.27	0.25
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	648.60	649.06	90.15	0.14
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	658.95	658.95	112.67	0.17
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	629.08	619.07	30.56	0.05
	Gene expression data from Aft red fruit peel	exocarp	3	3	1067.65	1050.42	109.81	0.10
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	538.22	547.14	30.59	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1309.57	1297.85	23.86	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	766.48	817.19	150.91	0.20
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	929.97	929.97	22.27	0.02
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	757.94	755.24	143.72	0.19
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	727.72	727.72	137.53	0.19
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	706.76	730.46	61.45	0.09
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	467.42	467.42	29.17	0.06
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	489.41	489.41	9.55	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	459.48	460.47	3.05	0.01
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	494.00	506.36	30.42	0.06
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	720.40	767.90	144.75	0.20
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	836.33	861.74	87.20	0.10
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	885.09	877.43	15.60	0.02
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	638.75	638.98	40.69	0.06
	Gene expression data from Micro-Tom root	root	3	3	658.30	670.05	36.07	0.05

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	355.607	2e-4	P
	GSM480171 extract 1	429.466	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	633.765	2e-4	P
	GSM480213 extract 1	641.925	2e-4	P
	GSM480214 extract 1	592.274	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	821.356	2e-4	P
	GSM480181 extract 1	819.512	2e-4	P
	GSM480182 extract 1	1013.26	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	914.953	2e-4	P
	GSM480186 extract 1	641.625	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	649.06	2e-4	P
	GSM480189 extract 1	738.526	2e-4	P
	GSM480187 extract 1	558.223	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	579.278	2e-4	P
	GSM480184 extract 1	738.616	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	619.073	2e-4	P
	GSM480208 extract 1	604.786	2e-4	P
	GSM480207 extract 1	663.387	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	967.481	2e-4	P
	GSM480210 extract 1	1185.06	2e-4	P
	GSM480211 extract 1	1050.42	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	547.143	2e-4	P
	GSM480218 extract 1	504.161	2e-4	P
	GSM480220 extract 1	563.36	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	1337.03	2e-4	P
	GSM480221 extract 1	1293.84	2e-4	P
	GSM480222 extract 1	1297.85	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	596.755	2e-4	P
	GSM480192 extract 1	817.189	2e-4	P
	GSM480191 extract 1	885.508	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	914.225	2e-4	P
	GSM480196 extract 1	945.717	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	903	2e-4	P
	GSM480197 extract 1	615.593	2e-4	P
	GSM480198 extract 1	755.239	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	824.963	2e-4	P
	GSM480193 extract 1	630.467	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	748.966	2e-4	P
	GSM480228 extract 1	744.493	2e-4	P
	GSM480230 extract 1	716.421	2e-4	P
	GSM480231 extract 1	617.141	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	446.795	2e-4	P
	GSM480168 extract 1	488.047	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	496.166	2e-4	P
	GSM480173 extract 1	482.663	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	456.058	0.001	P
	GSM480174 extract 1	461.913	0.001	P
	GSM480175 extract 1	460.467	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	506.362	2e-4	P
	GSM480178 extract 1	459.339	2e-4	P
	GSM480179 extract 1	516.293	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	767.902	2e-4	P
	GSM480202 extract 1	557.874	2e-4	P
	GSM480200 extract 1	835.427	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	739.249	2e-4	P
	GSM480205 extract 1	861.744	2e-4	P
	GSM480204 extract 1	907.996	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	903.04	2e-4	P
	GSM480217 extract 1	877.434	2e-4	P
	GSM480216 extract 1	874.794	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	626.141	2e-4	P
	GSM480225 extract 1	651.82	2e-4	P
	GSM480226 extract 1	590.369	2e-4	P
	GSM480227 extract 1	686.664	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	670.051	2e-4	P
	GSM480165 extract 1	617.814	2e-4	P
	GSM480167 extract 1	687.03	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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