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Expression Template: Les.4345.2.A1_x_at

Template Basic Information

Template name:	Les.4345.2.A1_x_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U578708
External db links:	GenBank: AI781554

Annotations for unigene SGN-U578708 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLER-1-F5, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: chlorophyll a/b binding protein 1B Annotation Keywords: photosynthesis; light reactions; light-harvesting complex; light-regulated gene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|115819\|sp\|P07370\|CB2B_SOLLC	516	2e-144	100	795 bp (66.2%)	1
Description:	RecName:
arabidopsis	blastx	At1G29930.1	471	4e-133	88.76	795 bp (66.2%)	1
Description:	Symbols: AB140, CAB140, LHCB1.3, CAB1 \| CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll &hellip
swissprot	blastx	P07370	516	1e-145	100	795 bp (66.2%)	1
Description:	Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4345.2.A1_x_at:ProbePair0	PM	data not available	data not available	data not available
Les.4345.2.A1_x_at:ProbePair1	PM	data not available	data not available	data not available
Les.4345.2.A1_x_at:ProbePair10	PM	data not available	data not available	data not available
Les.4345.2.A1_x_at:ProbePair2	PM	data not available	data not available	data not available
Les.4345.2.A1_x_at:ProbePair3	PM	data not available	data not available	data not available
Les.4345.2.A1_x_at:ProbePair4	PM	data not available	data not available	data not available
Les.4345.2.A1_x_at:ProbePair5	PM	data not available	data not available	data not available
Les.4345.2.A1_x_at:ProbePair6	PM	data not available	data not available	data not available
Les.4345.2.A1_x_at:ProbePair7	PM	data not available	data not available	data not available
Les.4345.2.A1_x_at:ProbePair8	PM	data not available	data not available	data not available
Les.4345.2.A1_x_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	7733.02	7733.02	1990.75	0.26
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	874.63	851.00	631.80	0.72
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	9.38	9.29	0.73	0.08
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	74.93	63.47	43.09	0.58
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	10.32	10.32	1.34	0.13
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	670.33	710.71	123.57	0.18
	Gene expression data from Aft red fruit peel	exocarp	3	3	24.13	24.91	6.20	0.26
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1788.57	1811.16	150.89	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	55.87	53.78	19.86	0.36
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	11.32	12.40	6.99	0.62
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	6.19	6.19	3.26	0.53
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3.83	3.01	3.81	0.99
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	15.18	15.18	15.31	1.01
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	17.83	17.08	5.13	0.29
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	4959.61	4959.61	1693.52	0.34
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	7268.12	7268.12	87.55	0.01
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	6208.82	6139.55	2651.86	0.43
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	9151.09	9414.53	589.10	0.06
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	9.40	8.09	2.59	0.28
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	2381.08	2408.20	593.36	0.25
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	6.57	6.64	0.42	0.06
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	54.39	54.39	52.61	0.97
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	5.47	3.82	4.97	0.91
	Gene expression data from Micro-Tom root	root	3	3	23.08	21.41	9.76	0.42

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	9140.69	2e-4	P
	GSM480170 extract 1	6325.34	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	1517.92	2e-4	P
	GSM480200 extract 1	254.981	2e-4	P
	GSM480201 extract 1	851.002	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	9.29064	0.130	A
	GSM480217 extract 1	10.1617	0.038	P
	GSM480216 extract 1	8.7022	0.095	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	122.582	2e-4	P
	GSM480180 extract 1	38.7288	0.001	P
	GSM480181 extract 1	63.4653	0.006	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	9.37114	0.304	A
	GSM480185 extract 1	11.2729	0.081	A
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	768.653	2e-4	P
	GSM480206 extract 1	531.624	2e-4	P
	GSM480208 extract 1	710.708	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	29.8982	0.001	P
	GSM480210 extract 1	24.9073	0.004	P
	GSM480211 extract 1	17.5769	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	1811.16	2e-4	P
	GSM480218 extract 1	1627.66	2e-4	P
	GSM480220 extract 1	1926.89	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	37.142	2e-4	P
	GSM480222 extract 1	76.6967	2e-4	P
	GSM480223 extract 1	53.7809	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	3.84903	0.274	A
	GSM480190 extract 1	12.3983	7e-4	P
	GSM480192 extract 1	17.699	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	8.49722	0.366	A
	GSM480196 extract 1	3.88521	0.399	A
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	3.00749	0.246	A
	GSM480197 extract 1	0.507264	0.962	A
	GSM480198 extract 1	7.98389	0.366	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	4.35116	0.399	A
	GSM480194 extract 1	26.0011	0.003	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	19.3361	0.038	P
	GSM480228 extract 1	14.8196	0.030	P
	GSM480231 extract 1	12.8044	0.004	P
	GSM480230 extract 1	24.3484	0.001	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	3762.11	2e-4	P
	GSM480169 extract 1	6157.11	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	7206.21	2e-4	P
	GSM480172 extract 1	7330.02	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	6139.55	2e-4	P
	GSM480175 extract 1	3592.28	2e-4	P
	GSM480176 extract 1	8894.64	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	9562.49	2e-4	P
	GSM480178 extract 1	9414.53	2e-4	P
	GSM480177 extract 1	8476.24	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	8.08765	0.024	P
	GSM480205 extract 1	12.3844	0.056	M
	GSM480204 extract 1	7.73983	0.195	A
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	2408.2	2e-4	P
	GSM480212 extract 1	1774.63	2e-4	P
	GSM480214 extract 1	2960.42	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	6.11906	0.432	A
	GSM480188 extract 1	6.63809	0.466	A
	GSM480189 extract 1	6.95326	0.304	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	17.1897	0.008	P
	GSM480184 extract 1	91.586	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	2.95074	0.534	A
	GSM480225 extract 1	1.55554	0.534	A
	GSM480226 extract 1	12.661	0.095	A
	GSM480227 extract 1	4.69287	0.112	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	33.5727	7e-4	P
	GSM480166 extract 1	21.4148	0.014	P
	GSM480167 extract 1	14.2584	0.008	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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