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Expression Template: Les.3253.1.S1_at

Template Basic Information

Template name:	Les.3253.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580929 SGN-U580929 SGN-U580929
External db links:	GenBank: AW219979

Annotations for unigene SGN-U580929 (manual: 1 | blast: 3 | go: 4 )

Manual annotations

Based on clone cLEG-30-B3, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "ribosomal protein, 60S ribosomal protein L24" Annotation Keywords: protein biosynthesis; ribosome complex

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|82400154\|gb\|ABB72816.1\|	206	1e-51	95.24	441 bp (32.0%)	2
Description:	ribosomal protein L24-like protein [Solanum tuberosum]
arabidopsis	blastx	At3G53020.1	193	2e-49	91.15	339 bp (24.6%)	2
Description:	Symbols: RPL24B, RPL24, STV1 \| STV1 (SHORT VALVE1); structural constituent of ribosome \| chr3:&hellip
swissprot	blastx	Q9FUL4	197	2e-49	93.81	339 bp (24.6%)	2
Description:	60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1

GO Terms Annotations

GO:0005622intracellular
GO:0005840ribosome
GO:0006412protein biosynthesis
GO:0003735structural constituent of ribosome

Annotations for unigene SGN-U580929 (manual: 1 | blast: 3 | go: 4 )

Manual annotations

Based on clone cLEG-30-B3, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "ribosomal protein, 60S ribosomal protein L24" Annotation Keywords: protein biosynthesis; ribosome complex

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|82400154\|gb\|ABB72816.1\|	206	1e-51	95.24	441 bp (32.0%)	2
Description:	ribosomal protein L24-like protein [Solanum tuberosum]
arabidopsis	blastx	At3G53020.1	193	2e-49	91.15	339 bp (24.6%)	2
Description:	Symbols: RPL24B, RPL24, STV1 \| STV1 (SHORT VALVE1); structural constituent of ribosome \| chr3:&hellip
swissprot	blastx	Q9FUL4	197	2e-49	93.81	339 bp (24.6%)	2
Description:	60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1

GO Terms Annotations

GO:0005622intracellular
GO:0005840ribosome
GO:0003735structural constituent of ribosome
GO:0006412protein biosynthesis

Annotations for unigene SGN-U580929 (manual: 1 | blast: 3 | go: 4 )

Manual annotations

Based on clone cLEG-30-B3, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "ribosomal protein, 60S ribosomal protein L24" Annotation Keywords: protein biosynthesis; ribosome complex

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|82400154\|gb\|ABB72816.1\|	206	1e-51	95.24	441 bp (32.0%)	2
Description:	ribosomal protein L24-like protein [Solanum tuberosum]
arabidopsis	blastx	At3G53020.1	193	2e-49	91.15	339 bp (24.6%)	2
Description:	Symbols: RPL24B, RPL24, STV1 \| STV1 (SHORT VALVE1); structural constituent of ribosome \| chr3:&hellip
swissprot	blastx	Q9FUL4	197	2e-49	93.81	339 bp (24.6%)	2
Description:	60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1

GO Terms Annotations

GO:0005622intracellular
GO:0005840ribosome
GO:0003735structural constituent of ribosome
GO:0006412protein biosynthesis

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3253.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3253.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3253.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3253.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3253.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3253.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3253.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3253.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3253.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3253.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3253.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2399.56	2399.56	409.80	0.17
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1454.22	1443.17	95.22	0.07
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	2045.69	2045.69	348.33	0.17
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2280.04	2243.49	147.03	0.06
	Gene expression data from Aft red fruit peel	exocarp	3	3	3168.32	3214.67	180.69	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1816.31	1870.46	185.59	0.10
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2270.87	2256.32	41.10	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	3251.57	3281.07	767.62	0.24
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	2224.58	2224.58	312.22	0.14
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2331.54	2334.82	11.95	0.01
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2671.67	2671.67	261.52	0.10
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	3425.28	3495.41	319.66	0.09
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	2633.80	2633.80	28.18	0.01
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2431.20	2431.20	149.60	0.06
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	2503.19	2499.27	24.15	0.01
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2779.57	2801.48	370.68	0.13
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1887.15	1867.42	153.91	0.08
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	2879.10	2874.72	66.34	0.02
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1762.13	1793.42	97.61	0.06
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	2211.33	2338.30	600.37	0.27
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	2121.80	2121.80	644.20	0.30
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	2204.55	2213.49	16.92	0.01
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	3559.49	3797.73	633.84	0.18
	Gene expression data from Micro-Tom root	root	3	3	3649.12	3582.20	174.81	0.05

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	2109.79	2e-4	P
	GSM480170 extract 1	2689.33	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1554.48	2e-4	P
	GSM480216 extract 1	1443.17	2e-4	P
	GSM480217 extract 1	1365	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1799.38	2e-4	P
	GSM480184 extract 1	2291.99	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	2441.9	2e-4	P
	GSM480206 extract 1	2243.49	2e-4	P
	GSM480208 extract 1	2154.73	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	2968.97	2e-4	P
	GSM480210 extract 1	3321.32	2e-4	P
	GSM480211 extract 1	3214.67	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	1609.66	2e-4	P
	GSM480220 extract 1	1968.8	2e-4	P
	GSM480218 extract 1	1870.46	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	2256.32	2e-4	P
	GSM480222 extract 1	2239.03	2e-4	P
	GSM480223 extract 1	2317.27	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	2469.62	2e-4	P
	GSM480191 extract 1	3281.07	2e-4	P
	GSM480192 extract 1	4004.01	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	2445.35	2e-4	P
	GSM480195 extract 1	2003.81	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	2318.29	2e-4	P
	GSM480198 extract 1	2334.82	2e-4	P
	GSM480199 extract 1	2341.5	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	2486.74	2e-4	P
	GSM480194 extract 1	2856.59	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	3366.68	2e-4	P
	GSM480228 extract 1	3711.33	2e-4	P
	GSM480229 extract 1	3624.14	2e-4	P
	GSM480231 extract 1	2998.97	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	2653.73	2e-4	P
	GSM480169 extract 1	2613.88	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	2325.41	2e-4	P
	GSM480172 extract 1	2536.98	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	2481.25	2e-4	P
	GSM480176 extract 1	2499.27	2e-4	P
	GSM480175 extract 1	2529.06	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	2398.42	2e-4	P
	GSM480178 extract 1	2801.48	2e-4	P
	GSM480179 extract 1	3138.8	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1867.42	2e-4	P
	GSM480200 extract 1	1744.06	2e-4	P
	GSM480202 extract 1	2049.97	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	2947.52	2e-4	P
	GSM480205 extract 1	2815.06	2e-4	P
	GSM480204 extract 1	2874.72	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1793.42	2e-4	P
	GSM480214 extract 1	1840.26	2e-4	P
	GSM480213 extract 1	1652.71	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	2738.06	2e-4	P
	GSM480180 extract 1	1557.63	2e-4	P
	GSM480181 extract 1	2338.3	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1666.28	2e-4	P
	GSM480186 extract 1	2577.32	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	2213.49	2e-4	P
	GSM480187 extract 1	2215.13	2e-4	P
	GSM480189 extract 1	2185.04	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	4020.42	2e-4	P
	GSM480226 extract 1	3814.34	2e-4	P
	GSM480224 extract 1	3781.11	2e-4	P
	GSM480227 extract 1	2622.08	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	3847.5	2e-4	P
	GSM480167 extract 1	3517.65	2e-4	P
	GSM480166 extract 1	3582.2	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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