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Expression Template: Les.4617.1.S1_at

Template Basic Information

Template name:	Les.4617.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577789
External db links:	GenBank: BT014212.1

Annotations for unigene SGN-U577789 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|2494076\|sp\|P93338\|GAPN_NICPL	967	96.57	1488 bp (62.4%)	1
Description:	gi\|2494076\|sp\|P93338\|GAPN_NICPL NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (Non-ph&hellip
arabidopsis	blastx	At2G24270.2	920	90.52	1488 bp (62.4%)	1
Description:	Symbols: ALDH11A3 \| ALDH11A3 (Aldehyde dehydrogenase 11A3); 3-chloroallyl aldehyde dehydrogena&hellip
swissprot	blastx	P93338	967	96.57	1488 bp (62.4%)	1
Description:	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Nicotiana plumbaginifolia GN=GAPN PE&hellip

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4617.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4617.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4617.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4617.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4617.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4617.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4617.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4617.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4617.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4617.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4617.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	590.26	590.26	356.94	0.60
	Gene expression data from Aft red fruit flesh	endocarp	3	3	43.81	42.99	8.22	0.19
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	44.91	40.14	9.50	0.21
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	152.92	152.92	2.42	0.02
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	575.52	575.52	185.74	0.32
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	378.72	368.42	49.02	0.13
	Gene expression data from Aft red fruit peel	exocarp	3	3	39.12	37.31	4.85	0.12
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	741.54	739.75	55.47	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	46.28	46.48	3.34	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	234.65	259.03	63.42	0.27
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	103.06	103.06	19.46	0.19
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	147.23	134.89	21.56	0.15
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	425.24	425.24	188.22	0.44
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	30.56	26.06	12.12	0.40
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	215.35	215.35	91.02	0.42
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	517.58	517.58	23.27	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	782.33	307.07	844.43	1.08
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2011.95	1947.02	746.43	0.37
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	391.56	384.55	57.07	0.15
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	894.57	922.84	80.74	0.09
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	244.38	275.58	72.19	0.30
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	87.68	85.49	10.94	0.12
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	34.75	35.54	8.29	0.24
	Gene expression data from Micro-Tom root	root	3	3	14.80	12.55	5.33	0.36

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	337.87	2e-4	P
	GSM480171 extract 1	842.653	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	36.0306	7e-4	P
	GSM480203 extract 1	52.4142	2e-4	P
	GSM480204 extract 1	42.9944	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	55.8495	7e-4	P
	GSM480215 extract 1	38.748	2e-4	P
	GSM480217 extract 1	40.1364	0.001	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	154.625	2e-4	P
	GSM480186 extract 1	151.209	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	706.861	2e-4	P
	GSM480183 extract 1	444.183	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	368.425	2e-4	P
	GSM480206 extract 1	335.663	2e-4	P
	GSM480208 extract 1	432.064	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	35.4445	2e-4	P
	GSM480209 extract 1	44.619	2e-4	P
	GSM480210 extract 1	37.3104	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	739.751	2e-4	P
	GSM480219 extract 1	797.886	2e-4	P
	GSM480220 extract 1	686.993	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	49.506	2e-4	P
	GSM480223 extract 1	42.8424	7e-4	P
	GSM480221 extract 1	46.4837	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	259.027	2e-4	P
	GSM480191 extract 1	282.267	2e-4	P
	GSM480190 extract 1	162.657	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	116.82	2e-4	P
	GSM480196 extract 1	89.2953	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	134.685	2e-4	P
	GSM480197 extract 1	172.12	2e-4	P
	GSM480198 extract 1	134.887	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	292.15	2e-4	P
	GSM480194 extract 1	558.331	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	26.2556	2e-4	P
	GSM480230 extract 1	25.8662	2e-4	P
	GSM480231 extract 1	48.4727	2e-4	P
	GSM480229 extract 1	21.6578	0.002	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	150.991	2e-4	P
	GSM480169 extract 1	279.715	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	501.131	2e-4	P
	GSM480173 extract 1	534.034	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	282.64	2e-4	P
	GSM480175 extract 1	307.07	2e-4	P
	GSM480176 extract 1	1757.29	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	2788.72	2e-4	P
	GSM480179 extract 1	1300.11	2e-4	P
	GSM480178 extract 1	1947.02	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	384.55	2e-4	P
	GSM480200 extract 1	451.802	2e-4	P
	GSM480202 extract 1	338.316	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	957.366	2e-4	P
	GSM480212 extract 1	922.844	2e-4	P
	GSM480214 extract 1	803.488	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	295.73	7e-4	P
	GSM480180 extract 1	161.848	2e-4	P
	GSM480181 extract 1	275.576	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	85.4914	7e-4	P
	GSM480187 extract 1	99.5437	2e-4	P
	GSM480189 extract 1	78.001	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	43.9639	7e-4	P
	GSM480224 extract 1	23.9412	2e-4	P
	GSM480226 extract 1	36.7958	0.002	P
	GSM480227 extract 1	34.2874	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	20.8857	7e-4	P
	GSM480166 extract 1	10.9684	0.112	A
	GSM480167 extract 1	12.546	0.008	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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