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Expression Template: Les.4632.1.S1_at

Template Basic Information

Template name:	Les.4632.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581266
External db links:	GenBank: BT013079.1

Annotations for unigene SGN-U581266 (manual: 3 | blast: 3 | go: 4 )

Manual annotations

Based on clone cLEF-43-L23, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: GTP-binding protein Annotation Keywords: signal transduction; GTP mediated signal cascade

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|77999259\|gb\|ABB16976.1\|	498	6e-139	85.38	903 bp (67.7%)	2
Description:	GTP-binding-like protein [Solanum tuberosum]
arabidopsis	blastx	At5G05000.1	416	2e-116	68.08	921 bp (69.1%)	2
Description:	Symbols: ATTOC34, OEP34, TOC34 \| ATTOC34/OEP34 (Translocase of chloroplast 34) \| chr5:1474263-&hellip
swissprot	blastx	Q38906	416	2e-115	68.08	921 bp (69.1%)	2
Description:	Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2

GO Terms Annotations

GO:0006886intracellular protein transport
GO:0009707chloroplast outer membrane
GO:0005525GTP binding
GO:0015450protein translocase activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4632.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4632.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4632.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4632.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4632.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4632.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4632.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4632.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4632.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4632.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4632.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	974.05	974.05	145.75	0.15
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	738.00	746.29	46.08	0.06
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1353.20	1361.07	86.58	0.06
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	795.99	812.63	37.99	0.05
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1242.93	1238.34	25.73	0.02
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	834.06	834.06	68.82	0.08
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1566.43	1656.79	375.91	0.24
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1157.76	1167.10	16.22	0.01
	Gene expression data from Aft red fruit peel	exocarp	3	3	1232.31	1232.38	41.50	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1053.10	1051.35	65.24	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1384.42	1409.01	130.95	0.09
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1151.22	1150.82	187.57	0.16
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	791.24	791.24	20.22	0.03
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	991.26	992.62	79.86	0.08
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	862.60	862.60	64.21	0.07
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1116.09	1159.03	177.16	0.16
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	952.60	952.60	89.65	0.09
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1272.39	1272.39	26.45	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	938.53	930.81	27.48	0.03
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1309.01	1412.66	318.97	0.24
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	939.14	841.78	211.40	0.23
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	1178.34	1123.38	104.65	0.09
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	723.38	723.38	92.47	0.13
	Gene expression data from Micro-Tom root	root	3	3	771.15	814.36	129.89	0.17

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	1077.11	2e-4	P
	GSM480171 extract 1	870.995	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	688.348	2e-4	P
	GSM480201 extract 1	746.288	2e-4	P
	GSM480202 extract 1	779.376	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	1262.96	2e-4	P
	GSM480203 extract 1	1435.58	2e-4	P
	GSM480204 extract 1	1361.07	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	752.519	2e-4	P
	GSM480212 extract 1	822.824	2e-4	P
	GSM480214 extract 1	812.631	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1238.34	2e-4	P
	GSM480217 extract 1	1270.65	2e-4	P
	GSM480216 extract 1	1219.8	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	785.402	2e-4	P
	GSM480186 extract 1	882.723	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	1639.16	2e-4	P
	GSM480225 extract 1	1918.02	2e-4	P
	GSM480226 extract 1	1674.41	2e-4	P
	GSM480227 extract 1	1034.12	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	1139.03	2e-4	P
	GSM480207 extract 1	1167.1	2e-4	P
	GSM480208 extract 1	1167.15	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	1190.77	2e-4	P
	GSM480210 extract 1	1232.38	2e-4	P
	GSM480211 extract 1	1273.77	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	988.763	2e-4	P
	GSM480219 extract 1	1051.35	2e-4	P
	GSM480218 extract 1	1119.2	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	1501.33	2e-4	P
	GSM480221 extract 1	1409.01	2e-4	P
	GSM480223 extract 1	1242.92	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	1338.99	2e-4	P
	GSM480191 extract 1	1150.82	2e-4	P
	GSM480190 extract 1	963.852	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	776.942	2e-4	P
	GSM480195 extract 1	805.533	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1070.44	2e-4	P
	GSM480198 extract 1	910.738	2e-4	P
	GSM480199 extract 1	992.615	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	817.201	2e-4	P
	GSM480194 extract 1	908.008	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	1113.6	2e-4	P
	GSM480229 extract 1	1276.43	2e-4	P
	GSM480230 extract 1	1204.46	2e-4	P
	GSM480231 extract 1	869.863	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1015.99	2e-4	P
	GSM480169 extract 1	889.207	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1253.69	2e-4	P
	GSM480173 extract 1	1291.09	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	969.044	2e-4	P
	GSM480174 extract 1	930.807	2e-4	P
	GSM480175 extract 1	915.747	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	951.108	2e-4	P
	GSM480179 extract 1	1563.27	2e-4	P
	GSM480178 extract 1	1412.66	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	1181.68	2e-4	P
	GSM480180 extract 1	841.78	2e-4	P
	GSM480181 extract 1	793.954	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	1123.38	2e-4	P
	GSM480189 extract 1	1112.62	2e-4	P
	GSM480187 extract 1	1299.02	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	788.763	2e-4	P
	GSM480183 extract 1	657.993	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	873.934	2e-4	P
	GSM480166 extract 1	625.166	2e-4	P
	GSM480165 extract 1	814.362	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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