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Expression Template: Les.5669.1.S1_at

Template Basic Information

Template name:	Les.5669.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577411
External db links:	GenBank: BT014357.1

Annotations for unigene SGN-U577411 (manual: 1 | blast: 3 | go: 4 )

Manual annotations

Based on clone cLEM-8-P14, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: inosine-5-monophosphate dehydrogenase Annotation Keywords: nucleic acid metabolism; nucleotide biosynthesis; purine biosynthesis

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|156763655\|gb\|ABU94684.1\|	742	76.34	1497 bp (81.7%)	2
Description:	inosine-5'-monophosphate dehydrogenase [Camellia sinensis]
arabidopsis	blastx	At1G16350.1	686	70.6	1485 bp (81.1%)	2
Description:	inosine-5'-monophosphate dehydrogenase, putative \| chr1:5590945-5592866 FORWARD
swissprot	blastx	Q9SA34	686	70.6	1485 bp (81.1%)	2
Description:	Probable inosine-5'-monophosphate dehydrogenase OS=Arabidopsis thaliana GN=At1g16350 PE=2 SV=1

GO Terms Annotations

GO:0008152metabolism
GO:0003938IMP dehydrogenase activity
GO:0003824catalytic activity
GO:0006177GMP biosynthesis

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5669.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.5669.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.5669.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.5669.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.5669.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.5669.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.5669.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.5669.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.5669.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.5669.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.5669.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	655.39	655.39	52.08	0.08
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1432.27	1438.25	61.81	0.04
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1294.23	1328.91	104.32	0.08
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1212.33	1212.33	42.40	0.03
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1261.18	1261.18	193.63	0.15
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1502.79	1479.29	97.01	0.06
	Gene expression data from Aft red fruit peel	exocarp	3	3	1463.77	1452.53	31.50	0.02
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1655.26	1677.92	63.00	0.04
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2137.46	2166.82	100.70	0.05
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1224.83	1231.40	99.63	0.08
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1611.28	1611.28	270.69	0.17
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1625.46	1704.20	182.28	0.11
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1454.07	1454.07	358.25	0.25
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1264.57	1200.31	260.44	0.21
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	842.48	842.48	91.08	0.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	571.40	571.40	16.20	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	749.63	762.09	38.27	0.05
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	732.82	739.61	66.55	0.09
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1617.82	1666.15	110.43	0.07
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1608.31	1583.91	55.24	0.03
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1615.68	1615.57	66.91	0.04
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	1290.43	1258.46	111.71	0.09
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1009.99	870.33	339.06	0.34
	Gene expression data from Micro-Tom root	root	3	3	1288.38	1300.51	41.85	0.03

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	618.567	2e-4	P
	GSM480171 extract 1	692.22	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	1367.68	2e-4	P
	GSM480204 extract 1	1438.25	2e-4	P
	GSM480205 extract 1	1490.87	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1176.98	2e-4	P
	GSM480181 extract 1	1376.79	2e-4	P
	GSM480182 extract 1	1328.91	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1242.31	2e-4	P
	GSM480186 extract 1	1182.35	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1124.26	2e-4	P
	GSM480184 extract 1	1398.1	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	1479.29	2e-4	P
	GSM480207 extract 1	1609.39	2e-4	P
	GSM480208 extract 1	1419.68	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	1499.34	2e-4	P
	GSM480210 extract 1	1452.53	2e-4	P
	GSM480211 extract 1	1439.43	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	1584.06	2e-4	P
	GSM480219 extract 1	1677.92	2e-4	P
	GSM480220 extract 1	1703.8	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	2166.82	2e-4	P
	GSM480222 extract 1	2025.34	2e-4	P
	GSM480223 extract 1	2220.21	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	1231.4	2e-4	P
	GSM480190 extract 1	1122.07	2e-4	P
	GSM480191 extract 1	1321.01	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1419.87	2e-4	P
	GSM480196 extract 1	1802.68	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	1704.2	2e-4	P
	GSM480197 extract 1	1417.05	2e-4	P
	GSM480199 extract 1	1755.14	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1200.75	2e-4	P
	GSM480194 extract 1	1707.39	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	1287	2e-4	P
	GSM480230 extract 1	1113.63	2e-4	P
	GSM480228 extract 1	1035.62	2e-4	P
	GSM480231 extract 1	1622.03	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	778.073	2e-4	P
	GSM480169 extract 1	906.885	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	559.945	2e-4	P
	GSM480172 extract 1	582.854	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	762.09	2e-4	P
	GSM480174 extract 1	706.688	2e-4	P
	GSM480176 extract 1	780.125	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	663.135	2e-4	P
	GSM480177 extract 1	739.607	2e-4	P
	GSM480178 extract 1	795.715	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	1491.46	2e-4	P
	GSM480202 extract 1	1666.15	2e-4	P
	GSM480201 extract 1	1695.84	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	1569.48	2e-4	P
	GSM480212 extract 1	1671.55	2e-4	P
	GSM480214 extract 1	1583.91	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1548.83	2e-4	P
	GSM480216 extract 1	1615.57	2e-4	P
	GSM480217 extract 1	1682.64	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	1198.2	2e-4	P
	GSM480188 extract 1	1258.46	2e-4	P
	GSM480189 extract 1	1414.64	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	878.842	2e-4	P
	GSM480226 extract 1	861.815	2e-4	P
	GSM480225 extract 1	784.475	2e-4	P
	GSM480227 extract 1	1514.84	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	1241.8	2e-4	P
	GSM480165 extract 1	1300.51	2e-4	P
	GSM480167 extract 1	1322.83	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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