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Expression Template: Les.4920.1.S1_at

Template Basic Information

Template name:	Les.4920.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U584308
External db links:	GenBank: BT012902.1

Annotations for unigene SGN-U584308 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15594035\|emb\|CAC69852.1\|	484	8e-135	89.41	1011 bp (57.0%)	3
Description:	nucleic acid binding protein [Nicotiana tabacum]
arabidopsis	blastx	At1G47490.1	385	4e-107	68.53	1011 bp (57.0%)	3
Description:	Symbols: ATRBP47C \| ATRBP47C; RNA binding \| chr1:17427241-17429622 FORWARD
swissprot	blastx	O60176	209	5e-53	40.99	834 bp (47.0%)	3
Description:	Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4920.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4920.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4920.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4920.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4920.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4920.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4920.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4920.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4920.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4920.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4920.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	373.94	373.94	34.97	0.09
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	282.07	292.84	31.33	0.11
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	27.27	27.27	9.33	0.34
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	212.86	217.26	7.79	0.04
	Gene expression data from Aft red fruit peel	exocarp	3	3	50.68	52.34	6.13	0.12
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	215.11	211.47	20.86	0.10
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	31.77	31.59	3.07	0.10
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	343.93	305.83	96.79	0.28
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	7.63	7.63	2.76	0.36
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	13.57	13.22	5.71	0.42
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	13.47	13.47	2.53	0.19
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	21.76	20.02	10.33	0.47
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	371.51	371.51	42.03	0.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	385.63	385.63	7.28	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	460.14	485.52	59.45	0.13
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	507.73	514.85	114.32	0.23
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	218.48	211.34	13.17	0.06
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	59.57	58.65	3.88	0.07
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	78.25	80.96	13.64	0.17
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	350.38	332.42	41.46	0.12
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	41.58	40.80	7.03	0.17
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	50.30	50.30	17.21	0.34
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	53.80	54.20	11.36	0.21
	Gene expression data from Micro-Tom root	root	3	3	922.59	932.64	178.79	0.19

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	398.665	2e-4	P
	GSM480171 extract 1	349.209	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	306.604	2e-4	P
	GSM480213 extract 1	246.781	2e-4	P
	GSM480214 extract 1	292.838	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	20.674	0.014	P
	GSM480185 extract 1	33.8739	0.011	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	217.448	2e-4	P
	GSM480207 extract 1	217.263	2e-4	P
	GSM480208 extract 1	203.87	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	52.3441	2e-4	P
	GSM480209 extract 1	55.8147	2e-4	P
	GSM480211 extract 1	43.894	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	237.552	2e-4	P
	GSM480220 extract 1	211.471	2e-4	P
	GSM480219 extract 1	196.313	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	34.9255	0.001	P
	GSM480221 extract 1	31.594	0.002	P
	GSM480223 extract 1	28.798	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	271.976	2e-4	P
	GSM480192 extract 1	453.973	2e-4	P
	GSM480191 extract 1	305.832	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	9.58398	0.056	M
	GSM480196 extract 1	5.6812	0.274	A
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	8.04808	0.246	A
	GSM480197 extract 1	19.4447	0.011	P
	GSM480199 extract 1	13.2166	0.056	M
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	15.2572	0.014	P
	GSM480194 extract 1	11.6806	0.001	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	20.6253	0.006	P
	GSM480229 extract 1	19.405	0.024	P
	GSM480230 extract 1	11.1093	0.068	A
	GSM480231 extract 1	35.8873	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	341.788	2e-4	P
	GSM480168 extract 1	401.233	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	390.777	2e-4	P
	GSM480172 extract 1	380.483	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	392.206	2e-4	P
	GSM480174 extract 1	502.68	2e-4	P
	GSM480175 extract 1	485.52	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	390.022	2e-4	P
	GSM480179 extract 1	514.852	2e-4	P
	GSM480178 extract 1	618.325	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	210.414	2e-4	P
	GSM480201 extract 1	233.669	2e-4	P
	GSM480200 extract 1	211.341	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	63.8343	2e-4	P
	GSM480203 extract 1	58.6456	2e-4	P
	GSM480204 extract 1	56.2383	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	80.9611	2e-4	P
	GSM480215 extract 1	90.3385	2e-4	P
	GSM480217 extract 1	63.456	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	320.932	2e-4	P
	GSM480180 extract 1	332.415	2e-4	P
	GSM480182 extract 1	397.789	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	34.9762	0.004	P
	GSM480187 extract 1	48.9752	0.004	P
	GSM480189 extract 1	40.7971	0.003	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	62.4637	0.003	P
	GSM480183 extract 1	38.1282	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	65.8076	2e-4	P
	GSM480224 extract 1	41.0005	7e-4	P
	GSM480226 extract 1	47.9217	0.001	P
	GSM480227 extract 1	60.481	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	738.991	2e-4	P
	GSM480165 extract 1	932.636	2e-4	P
	GSM480167 extract 1	1096.14	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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