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Expression Template: Les.3981.1.S1_at

Template Basic Information

Template name:	Les.3981.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U584032
External db links:	GenBank: X72729.1

Annotations for unigene SGN-U584032 (manual: 2 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEG-41-P23, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: glucuronosyl transferase Annotation Keywords: ripening-related; carbohydrate metabolism

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|629669\|pir\|\|S39507	956		100	1416 bp (73.9%)	1
Description:	glucuronosyl transferase homolog, ripening-related - tomato (fragment)
arabidopsis	blastx	At3G11340.1	372	3e-103	43.47	1323 bp (69.0%)	1
Description:	UDP-glucoronosyl/UDP-glucosyl transferase family protein \| chr3:3556734-3558155 FORWARD
swissprot	blastx	Q9FI99	324	1e-87	38.01	1359 bp (70.9%)	1
Description:	Cytokinin-N-glucosyltransferase 1 OS=Arabidopsis thaliana GN=UGT76C1 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3981.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3981.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3981.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3981.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3981.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3981.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3981.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3981.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3981.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3981.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3981.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	9.32	9.32	3.15	0.34
	Gene expression data from Aft red fruit flesh	endocarp	3	3	6333.32	6186.83	532.79	0.08
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1767.77	1530.53	862.47	0.49
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	6620.60	6604.97	243.70	0.04
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1573.56	1493.61	522.17	0.33
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	8384.97	8384.97	250.95	0.03
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	4932.37	4931.44	291.55	0.06
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	7606.48	7606.48	1373.71	0.18
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	438.26	446.86	29.61	0.07
	Gene expression data from Aft red fruit peel	exocarp	3	3	6554.32	6511.92	222.48	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1576.18	1549.39	292.24	0.19
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	6531.00	6206.85	729.70	0.11
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	983.51	1042.77	292.23	0.30
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	7653.83	7653.83	727.63	0.10
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	4429.96	4555.01	357.07	0.08
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	7784.32	7784.32	249.18	0.03
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	8284.25	8438.79	867.01	0.10
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1.11	1.11	1.03	0.93
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	8.13	8.13	1.42	0.17
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	12.30	11.99	1.76	0.14
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	5.91	6.44	5.42	0.92
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	747.66	865.92	262.83	0.35
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	7619.02	8076.40	1768.92	0.23
	Gene expression data from Micro-Tom root	root	3	3	5.34	5.71	1.18	0.22

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	11.5446	0.171	A
	GSM480171 extract 1	7.0863	0.046	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	5889.1	2e-4	P
	GSM480204 extract 1	6924.03	2e-4	P
	GSM480205 extract 1	6186.83	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	2724.03	2e-4	P
	GSM480212 extract 1	1048.75	2e-4	P
	GSM480214 extract 1	1530.53	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	6604.97	2e-4	P
	GSM480217 extract 1	6871.74	2e-4	P
	GSM480216 extract 1	6385.1	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	2131.09	2e-4	P
	GSM480180 extract 1	1493.61	2e-4	P
	GSM480182 extract 1	1095.97	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	8562.42	2e-4	P
	GSM480186 extract 1	8207.52	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	5224.38	2e-4	P
	GSM480188 extract 1	4641.28	2e-4	P
	GSM480189 extract 1	4931.44	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	6635.12	2e-4	P
	GSM480183 extract 1	8577.84	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	405.301	2e-4	P
	GSM480208 extract 1	462.625	2e-4	P
	GSM480206 extract 1	446.855	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	6356.09	2e-4	P
	GSM480209 extract 1	6794.94	2e-4	P
	GSM480210 extract 1	6511.92	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	1298.26	2e-4	P
	GSM480220 extract 1	1549.39	2e-4	P
	GSM480219 extract 1	1880.9	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	6019.53	2e-4	P
	GSM480221 extract 1	7366.61	2e-4	P
	GSM480222 extract 1	6206.85	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	1042.77	2e-4	P
	GSM480192 extract 1	666.197	2e-4	P
	GSM480191 extract 1	1241.57	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	8168.34	2e-4	P
	GSM480196 extract 1	7139.32	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	4027.19	2e-4	P
	GSM480197 extract 1	4555.01	2e-4	P
	GSM480198 extract 1	4707.69	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	7608.12	2e-4	P
	GSM480194 extract 1	7960.52	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	8513.04	2e-4	P
	GSM480228 extract 1	8364.55	2e-4	P
	GSM480229 extract 1	9166.19	2e-4	P
	GSM480231 extract 1	7093.23	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1.8331	0.568	A
	GSM480169 extract 1	0.380911	0.696	A
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	9.13802	0.081	A
	GSM480172 extract 1	7.12868	0.038	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	14.1892	0.030	P
	GSM480174 extract 1	11.991	0.150	A
	GSM480176 extract 1	10.7143	0.046	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	6.43509	0.334	A
	GSM480177 extract 1	11.0504	0.004	P
	GSM480179 extract 1	0.25299	0.850	A
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	930.592	2e-4	P
	GSM480200 extract 1	865.916	2e-4	P
	GSM480202 extract 1	446.47	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	5284.76	2e-4	P
	GSM480224 extract 1	9038.53	2e-4	P
	GSM480225 extract 1	8943.88	2e-4	P
	GSM480226 extract 1	7208.93	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	6.29785	0.130	A
	GSM480167 extract 1	5.70963	0.130	A
	GSM480166 extract 1	4.02748	0.500	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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