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Expression Template: Les.4035.1.S1_at

Template Basic Information

Template name:	Les.4035.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U585333
External db links:	GenBank: AF204788.1

Annotations for unigene SGN-U585333 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|211853238\|emb\|CAP16663.1\|	508	3e-142	99.62	783 bp (76.8%)	2
Description:	tetratricopeptide repeat protein [Solanum lycopersicum]
arabidopsis	blastx	At4G30480.2	297	6e-81	60.07	777 bp (76.2%)	2
Description:	tetratricopeptide repeat (TPR)-containing protein \| chr4:14897506-14898943 FORWARD
swissprot	blastx	Q99614	159	2e-38	41.48	684 bp (67.1%)	2
Description:	Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4035.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4035.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4035.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4035.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4035.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4035.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4035.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4035.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4035.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4035.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4035.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	151.66	151.66	27.92	0.18
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	563.52	533.43	70.72	0.13
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	2473.00	2400.33	131.15	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	444.06	455.65	67.17	0.15
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	906.24	906.24	204.72	0.23
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	708.11	708.11	75.77	0.11
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	976.31	910.18	256.89	0.26
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	403.12	402.19	13.66	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	1274.14	1240.33	90.46	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	436.34	432.83	7.47	0.02
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1298.72	1312.59	28.33	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	471.78	408.10	131.99	0.28
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	885.34	885.34	89.76	0.10
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1291.65	1315.25	104.89	0.08
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	881.61	881.61	223.80	0.25
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	953.52	972.55	86.27	0.09
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	216.44	216.44	24.88	0.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	152.86	152.86	10.98	0.07
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	223.74	223.49	4.47	0.02
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	276.76	267.68	48.87	0.18
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	646.44	668.65	81.98	0.13
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1896.16	1905.82	38.27	0.02
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	1473.92	1314.44	406.76	0.28
	Gene expression data from Micro-Tom root	root	3	3	351.42	374.24	54.82	0.16

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	171.405	2e-4	P
	GSM480170 extract 1	131.922	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	533.427	2e-4	P
	GSM480213 extract 1	644.307	2e-4	P
	GSM480214 extract 1	512.828	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	2400.33	2e-4	P
	GSM480215 extract 1	2624.39	2e-4	P
	GSM480217 extract 1	2394.27	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	455.651	2e-4	P
	GSM480180 extract 1	371.841	2e-4	P
	GSM480181 extract 1	504.673	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	1051	2e-4	P
	GSM480185 extract 1	761.485	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	654.535	2e-4	P
	GSM480184 extract 1	761.691	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	759.171	2e-4	P
	GSM480224 extract 1	810.176	2e-4	P
	GSM480226 extract 1	1010.19	2e-4	P
	GSM480227 extract 1	1325.7	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	389.944	2e-4	P
	GSM480206 extract 1	402.193	2e-4	P
	GSM480208 extract 1	417.216	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	1205.45	2e-4	P
	GSM480210 extract 1	1240.33	2e-4	P
	GSM480211 extract 1	1376.63	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	444.925	2e-4	P
	GSM480219 extract 1	431.277	2e-4	P
	GSM480220 extract 1	432.828	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1317.44	2e-4	P
	GSM480222 extract 1	1266.13	2e-4	P
	GSM480223 extract 1	1312.59	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	383.7	2e-4	P
	GSM480192 extract 1	408.095	2e-4	P
	GSM480191 extract 1	623.532	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	948.807	2e-4	P
	GSM480195 extract 1	821.871	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1315.25	2e-4	P
	GSM480198 extract 1	1176.98	2e-4	P
	GSM480199 extract 1	1382.73	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	723.363	2e-4	P
	GSM480193 extract 1	1039.86	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	1006.45	2e-4	P
	GSM480228 extract 1	938.643	2e-4	P
	GSM480229 extract 1	838.108	2e-4	P
	GSM480231 extract 1	1030.87	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	198.851	2e-4	P
	GSM480168 extract 1	234.036	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	160.624	2e-4	P
	GSM480173 extract 1	145.102	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	219.408	2e-4	P
	GSM480175 extract 1	223.494	2e-4	P
	GSM480176 extract 1	228.334	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	329.536	2e-4	P
	GSM480178 extract 1	267.678	2e-4	P
	GSM480179 extract 1	233.068	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	668.646	2e-4	P
	GSM480201 extract 1	715.02	2e-4	P
	GSM480202 extract 1	555.643	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	1928.67	2e-4	P
	GSM480203 extract 1	1853.99	2e-4	P
	GSM480204 extract 1	1905.82	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	1171.07	2e-4	P
	GSM480187 extract 1	1936.25	2e-4	P
	GSM480189 extract 1	1314.44	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	391.135	2e-4	P
	GSM480166 extract 1	288.87	2e-4	P
	GSM480167 extract 1	374.244	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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