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Expression Template: Les.4769.1.S1_at

Template Basic Information

Template name:	Les.4769.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U583057
External db links:	GenBank: BT012708.1

Annotations for unigene SGN-U583057 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|77176889\|gb\|ABA64550.1\|	273	2e-71	100	384 bp (29.0%)	2
Description:	expansin-like protein precursor [Solanum lycopersicum]
arabidopsis	blastx	At3G45970.1	194	1e-49	64.66	396 bp (29.9%)	2
Description:	Symbols: EXPL1, ATEXPL1, ATHEXP BETA 2.1, ATEXLA1 \| ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIK&hellip
swissprot	blastx	Q9LZT4	194	9e-49	64.66	396 bp (29.9%)	2
Description:	Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4769.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4769.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4769.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4769.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4769.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4769.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4769.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4769.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4769.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4769.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4769.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2032.55	2032.55	160.94	0.08
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	2936.06	2941.17	194.83	0.07
	Gene expression data from Aft red fruit flesh	endocarp	3	3	324.19	309.64	53.32	0.16
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	208.97	195.33	24.69	0.12
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	2510.74	2452.00	101.84	0.04
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1385.27	1385.27	957.26	0.69
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	3031.19	3127.57	1388.73	0.46
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	3698.19	3641.80	157.43	0.04
	Gene expression data from Aft red fruit peel	exocarp	3	3	324.40	333.05	21.76	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2201.33	2094.06	214.63	0.10
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	294.95	276.48	118.80	0.40
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2155.19	2375.80	386.28	0.18
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	917.33	917.33	876.56	0.96
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2250.20	2306.72	492.92	0.22
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1265.31	1265.31	921.21	0.73
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2345.83	2552.95	1045.51	0.45
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	3122.60	3122.60	1089.16	0.35
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	5668.66	5668.66	102.69	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	436.04	443.29	38.20	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	417.20	410.32	144.17	0.35
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1865.70	2046.18	366.34	0.20
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	3897.56	3741.39	584.90	0.15
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1803.70	1803.70	1323.80	0.73
	Gene expression data from Micro-Tom root	root	3	3	4747.80	4720.68	453.61	0.10

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	2146.35	2e-4	P
	GSM480171 extract 1	1918.74	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	2738.72	2e-4	P
	GSM480200 extract 1	2941.17	2e-4	P
	GSM480202 extract 1	3128.28	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	383.271	7e-4	P
	GSM480204 extract 1	279.655	7e-4	P
	GSM480205 extract 1	309.635	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	195.331	2e-4	P
	GSM480215 extract 1	194.114	7e-4	P
	GSM480216 extract 1	237.473	7e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	2628.34	2e-4	P
	GSM480180 extract 1	2451.88	2e-4	P
	GSM480181 extract 1	2452	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	2062.16	2e-4	P
	GSM480186 extract 1	708.385	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	4610.37	2e-4	P
	GSM480224 extract 1	3385.98	2e-4	P
	GSM480226 extract 1	2869.17	2e-4	P
	GSM480227 extract 1	1259.25	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	3876.04	2e-4	P
	GSM480206 extract 1	3576.72	2e-4	P
	GSM480208 extract 1	3641.8	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	340.496	7e-4	P
	GSM480210 extract 1	299.638	2e-4	P
	GSM480211 extract 1	333.054	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	2061.49	2e-4	P
	GSM480218 extract 1	2448.45	2e-4	P
	GSM480219 extract 1	2094.06	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	186.468	2e-4	P
	GSM480222 extract 1	421.902	2e-4	P
	GSM480223 extract 1	276.485	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	2375.8	2e-4	P
	GSM480190 extract 1	1709.16	7e-4	P
	GSM480192 extract 1	2380.62	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1537.15	2e-4	P
	GSM480196 extract 1	297.503	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	2306.72	2e-4	P
	GSM480197 extract 1	1731.45	2e-4	P
	GSM480198 extract 1	2712.42	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	613.916	7e-4	P
	GSM480193 extract 1	1916.7	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	2927.3	2e-4	P
	GSM480228 extract 1	2178.59	2e-4	P
	GSM480229 extract 1	3327.71	2e-4	P
	GSM480231 extract 1	949.73	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	2352.45	2e-4	P
	GSM480168 extract 1	3892.76	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	5741.27	2e-4	P
	GSM480173 extract 1	5596.05	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	470.091	2e-4	P
	GSM480174 extract 1	443.291	7e-4	P
	GSM480175 extract 1	394.726	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	410.325	7e-4	P
	GSM480177 extract 1	276.586	7e-4	P
	GSM480179 extract 1	564.682	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	2106.78	2e-4	P
	GSM480213 extract 1	1444.13	2e-4	P
	GSM480214 extract 1	2046.18	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	3741.39	2e-4	P
	GSM480187 extract 1	4544.69	2e-4	P
	GSM480189 extract 1	3406.6	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	2739.77	2e-4	P
	GSM480184 extract 1	867.629	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	5214.36	2e-4	P
	GSM480166 extract 1	4720.68	2e-4	P
	GSM480167 extract 1	4308.35	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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