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Expression Template: Les.5270.1.S1_at

Template Basic Information

Template name:	Les.5270.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U576241
External db links:	GenBank: BT013611.1

Annotations for unigene SGN-U576241 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157351909\|emb\|CAO42873.1\|	846		84.8	1392 bp (51.3%)	1
Description:	unnamed
arabidopsis	blastx	At5G13480.1	733		75.32	1392 bp (51.3%)	1
Description:	Symbols: FY \| FY (FY) \| chr5:4326641-4331560 REVERSE
swissprot	blastx	Q9C0J8	474	9e-133	57.82	1122 bp (41.4%)	1
Description:	WD repeat-containing protein 33 OS=Homo sapiens GN=WDR33 PE=1 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5270.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.5270.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.5270.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.5270.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.5270.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.5270.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.5270.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.5270.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.5270.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.5270.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.5270.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	126.49	126.49	19.44	0.15
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	186.80	186.73	13.03	0.07
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	286.79	286.79	125.20	0.44
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	197.56	197.56	16.27	0.08
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	175.41	180.34	9.47	0.05
	Gene expression data from Aft red fruit peel	exocarp	3	3	233.53	213.03	41.51	0.18
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	169.51	174.00	9.24	0.05
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	291.51	292.40	9.77	0.03
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	179.33	193.62	51.36	0.29
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	227.47	227.47	41.58	0.18
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	233.69	257.24	43.88	0.19
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	155.53	155.53	26.11	0.17
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	260.91	265.71	36.94	0.14
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	149.43	149.43	5.14	0.03
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	143.47	143.47	4.09	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	198.90	201.34	5.89	0.03
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	139.72	141.31	8.56	0.06
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	249.91	245.13	21.77	0.09
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	166.92	162.37	17.98	0.11
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	318.50	321.80	17.12	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	227.65	225.80	36.25	0.16
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	298.76	285.52	23.44	0.08
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	277.90	265.60	56.11	0.20
	Gene expression data from Micro-Tom root	root	3	3	327.72	311.86	35.49	0.11

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	112.743	2e-4	P
	GSM480171 extract 1	140.236	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	186.734	2e-4	P
	GSM480200 extract 1	199.868	2e-4	P
	GSM480202 extract 1	173.8	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	375.317	2e-4	P
	GSM480186 extract 1	198.255	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	186.052	2e-4	P
	GSM480183 extract 1	209.059	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	164.483	2e-4	P
	GSM480208 extract 1	180.335	2e-4	P
	GSM480207 extract 1	181.4	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	213.031	2e-4	P
	GSM480210 extract 1	206.253	2e-4	P
	GSM480209 extract 1	281.294	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	175.645	2e-4	P
	GSM480219 extract 1	158.887	2e-4	P
	GSM480220 extract 1	173.995	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	281.319	2e-4	P
	GSM480221 extract 1	300.795	2e-4	P
	GSM480223 extract 1	292.404	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	193.615	2e-4	P
	GSM480191 extract 1	222.039	2e-4	P
	GSM480190 extract 1	122.339	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	198.07	2e-4	P
	GSM480196 extract 1	256.874	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	183.062	2e-4	P
	GSM480198 extract 1	260.78	2e-4	P
	GSM480199 extract 1	257.237	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	137.066	2e-4	P
	GSM480194 extract 1	173.998	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	296.715	2e-4	P
	GSM480228 extract 1	246.975	2e-4	P
	GSM480231 extract 1	284.448	2e-4	P
	GSM480230 extract 1	215.489	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	153.068	2e-4	P
	GSM480169 extract 1	145.794	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	146.364	2e-4	P
	GSM480173 extract 1	140.583	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	192.187	2e-4	P
	GSM480175 extract 1	201.338	2e-4	P
	GSM480176 extract 1	203.179	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	147.371	2e-4	P
	GSM480177 extract 1	141.306	2e-4	P
	GSM480179 extract 1	130.469	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	245.132	2e-4	P
	GSM480203 extract 1	230.919	2e-4	P
	GSM480205 extract 1	273.666	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	186.747	2e-4	P
	GSM480214 extract 1	151.652	2e-4	P
	GSM480213 extract 1	162.372	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	299.966	2e-4	P
	GSM480217 extract 1	333.725	2e-4	P
	GSM480216 extract 1	321.795	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	192.365	2e-4	P
	GSM480180 extract 1	225.795	2e-4	P
	GSM480181 extract 1	264.796	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	285.52	2e-4	P
	GSM480188 extract 1	284.946	2e-4	P
	GSM480189 extract 1	325.823	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	282.265	2e-4	P
	GSM480226 extract 1	225.84	2e-4	P
	GSM480225 extract 1	248.939	2e-4	P
	GSM480227 extract 1	354.559	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	368.374	2e-4	P
	GSM480167 extract 1	302.925	2e-4	P
	GSM480166 extract 1	311.857	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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