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Expression Template: Les.5039.1.S1_at

Template Basic Information

Template name:	Les.5039.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U571433
External db links:	GenBank: BT013157.1

Annotations for unigene SGN-U571433 (manual: 2 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEG-7-P23, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: cdc20 Annotation Keywords: cell cycle; cell cycle regulation

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147796362\|emb\|CAN70390.1\|	636	1e-180	69.01	1344 bp (82.3%)	3
Description:	hypothetical
arabidopsis	blastx	At4G33270.1	613	7e-176	67.54	1344 bp (82.3%)	3
Description:	Symbols: CDC20.1 \| CDC20.1; signal transducer \| chr4:16044549-16046594 REVERSE
swissprot	blastx	Q54MZ3	382	2e-105	45.49	1260 bp (77.1%)	3
Description:	Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5039.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.5039.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.5039.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.5039.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.5039.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.5039.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.5039.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.5039.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.5039.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.5039.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
Les.5039.1.S1_at:ProbePair1	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	33.83	33.83	15.21	0.45
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	234.89	238.07	21.26	0.09
	Gene expression data from Aft red fruit flesh	endocarp	3	3	119.37	111.99	21.98	0.18
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	225.58	228.00	37.59	0.17
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	221.61	222.36	9.45	0.04
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	172.82	163.16	52.20	0.30
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	162.38	152.83	30.26	0.19
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	233.68	223.90	27.16	0.12
	Gene expression data from Aft red fruit peel	exocarp	3	3	101.65	100.24	4.04	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	197.74	200.14	24.26	0.12
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	138.10	136.45	9.17	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	120.63	122.22	15.98	0.13
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	152.30	152.30	30.27	0.20
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	230.13	226.96	9.44	0.04
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	127.02	127.02	28.07	0.22
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	62.97	48.73	44.68	0.71
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	33.43	33.43	1.58	0.05
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	32.03	32.03	0.83	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	39.48	38.63	8.37	0.21
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	26.28	26.11	2.64	0.10
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	105.90	105.90	10.56	0.10
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	120.43	120.43	21.01	0.17
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	77.96	51.02	58.33	0.75
	Gene expression data from Micro-Tom root	root	3	3	19.04	18.75	2.60	0.14

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	44.5803	0.081	A
	GSM480170 extract 1	23.0747	0.150	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	254.387	2e-4	P
	GSM480201 extract 1	238.072	2e-4	P
	GSM480202 extract 1	212.218	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	111.989	2e-4	P
	GSM480203 extract 1	102.028	2e-4	P
	GSM480205 extract 1	144.084	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	227.997	2e-4	P
	GSM480213 extract 1	261.904	2e-4	P
	GSM480214 extract 1	186.846	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	230.667	2e-4	P
	GSM480215 extract 1	211.809	2e-4	P
	GSM480216 extract 1	222.359	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	163.162	2e-4	P
	GSM480181 extract 1	229.17	2e-4	P
	GSM480182 extract 1	126.126	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	138.041	2e-4	P
	GSM480188 extract 1	152.832	2e-4	P
	GSM480189 extract 1	196.26	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	264.379	2e-4	P
	GSM480206 extract 1	223.9	2e-4	P
	GSM480207 extract 1	212.766	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	98.5006	2e-4	P
	GSM480211 extract 1	106.197	2e-4	P
	GSM480210 extract 1	100.242	7e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	200.145	7e-4	P
	GSM480218 extract 1	172.367	7e-4	P
	GSM480220 extract 1	220.713	7e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	147.983	7e-4	P
	GSM480222 extract 1	129.86	2e-4	P
	GSM480221 extract 1	136.452	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	103.905	2e-4	P
	GSM480192 extract 1	122.225	2e-4	P
	GSM480190 extract 1	135.751	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	173.7	2e-4	P
	GSM480196 extract 1	130.896	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	226.959	2e-4	P
	GSM480197 extract 1	240.751	2e-4	P
	GSM480198 extract 1	222.682	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	107.175	7e-4	P
	GSM480193 extract 1	146.87	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	55.1422	0.002	P
	GSM480230 extract 1	42.3129	0.014	P
	GSM480229 extract 1	26.7409	0.008	P
	GSM480231 extract 1	127.695	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	34.5509	0.038	P
	GSM480169 extract 1	32.3138	0.019	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	32.6147	0.150	A
	GSM480173 extract 1	31.4461	0.219	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	38.6292	0.068	A
	GSM480175 extract 1	48.2546	0.024	P
	GSM480176 extract 1	31.5713	0.171	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	23.7244	0.038	P
	GSM480179 extract 1	26.1098	0.150	A
	GSM480177 extract 1	28.9929	0.219	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	98.4296	2e-4	P
	GSM480186 extract 1	113.37	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	105.569	2e-4	P
	GSM480184 extract 1	135.283	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	47.3537	2e-4	P
	GSM480224 extract 1	44.5823	2e-4	P
	GSM480226 extract 1	54.677	0.001	P
	GSM480227 extract 1	165.229	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	18.7521	0.019	P
	GSM480165 extract 1	16.6064	0.038	P
	GSM480166 extract 1	21.7744	0.011	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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