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Expression Template: LesAffx.3394.1.S1_at

Template Basic Information

Template name:	LesAffx.3394.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U563384
External db links:	GenBank: BT013543.1

Annotations for unigene SGN-U563384 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|89280637\|ref\|YP_514854.1\|	399	1e-108	100	603 bp (17.6%)	3
Description:	ribosomal
arabidopsis	blastx	AtCG00380.1	344	2e-94	88.06	603 bp (17.6%)	3
Description:	Symbol: RPS4 \| Chloroplast encoded ribosomal protein S4 \| chrC:45223-45828 REVERSE \| Aliases: RPS4
swissprot	blastx	Q2VEH5	399	6e-110	100	603 bp (17.6%)	3
Description:	30S ribosomal protein S4, chloroplastic OS=Solanum tuberosum GN=rps4

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.3394.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.3394.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.3394.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.3394.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.3394.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.3394.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.3394.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
LesAffx.3394.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.3394.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.3394.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.3394.1.S1_at:ProbePair2	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2426.04	2426.04	901.44	0.37
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1166.26	1155.95	81.25	0.07
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	2215.48	2161.69	99.90	0.05
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1079.11	1079.11	130.06	0.12
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1196.14	1237.63	190.09	0.16
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	927.94	927.94	409.66	0.44
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1255.23	1261.55	79.23	0.06
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2242.29	2373.95	279.70	0.12
	Gene expression data from Aft red fruit peel	exocarp	3	3	1413.09	1377.13	93.48	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2322.55	2442.22	306.85	0.13
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2269.51	2062.48	626.61	0.28
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1347.61	1343.18	179.54	0.13
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1483.97	1483.97	239.20	0.16
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1957.83	1861.29	249.65	0.13
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1036.69	1036.69	210.47	0.20
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1185.13	1107.84	246.95	0.21
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	820.77	820.77	79.69	0.10
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2371.07	2371.07	111.37	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	4336.36	4590.79	560.41	0.13
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	4396.51	4348.02	320.12	0.07
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	2273.03	2188.76	167.84	0.07
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	2849.50	2839.74	22.22	0.01
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1609.25	1684.02	488.08	0.30
	Gene expression data from Micro-Tom root	root	3	3	893.28	775.78	291.89	0.33

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	3063.46	2e-4	P
	GSM480171 extract 1	1788.63	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1090.66	2e-4	P
	GSM480205 extract 1	1155.95	2e-4	P
	GSM480203 extract 1	1252.18	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	2161.69	2e-4	P
	GSM480212 extract 1	2330.74	2e-4	P
	GSM480213 extract 1	2154	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1171.07	2e-4	P
	GSM480186 extract 1	987.144	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	1237.63	2e-4	P
	GSM480187 extract 1	1362.06	2e-4	P
	GSM480189 extract 1	988.741	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	638.263	2e-4	P
	GSM480183 extract 1	1217.61	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	1174.04	2e-4	P
	GSM480225 extract 1	1323.78	2e-4	P
	GSM480227 extract 1	1322.63	2e-4	P
	GSM480226 extract 1	1200.46	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	2373.95	2e-4	P
	GSM480206 extract 1	1921.05	2e-4	P
	GSM480207 extract 1	2431.86	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	1519.21	2e-4	P
	GSM480210 extract 1	1342.93	2e-4	P
	GSM480211 extract 1	1377.13	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	2442.22	2e-4	P
	GSM480218 extract 1	2551.54	2e-4	P
	GSM480219 extract 1	1973.9	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	2062.48	2e-4	P
	GSM480223 extract 1	1772.61	2e-4	P
	GSM480221 extract 1	2973.44	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1529.32	2e-4	P
	GSM480190 extract 1	1343.18	2e-4	P
	GSM480192 extract 1	1170.32	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1314.83	2e-4	P
	GSM480196 extract 1	1653.11	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	2241.33	2e-4	P
	GSM480199 extract 1	1770.86	2e-4	P
	GSM480197 extract 1	1861.29	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	887.866	2e-4	P
	GSM480194 extract 1	1185.51	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	984.114	2e-4	P
	GSM480228 extract 1	1153.46	2e-4	P
	GSM480230 extract 1	1062.23	2e-4	P
	GSM480231 extract 1	1540.72	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	877.12	2e-4	P
	GSM480169 extract 1	764.423	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	2449.82	2e-4	P
	GSM480173 extract 1	2292.32	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	4724.43	2e-4	P
	GSM480174 extract 1	4590.79	2e-4	P
	GSM480176 extract 1	3693.87	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	4738.11	2e-4	P
	GSM480177 extract 1	4103.4	2e-4	P
	GSM480178 extract 1	4348.02	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	2188.76	2e-4	P
	GSM480200 extract 1	2466.31	2e-4	P
	GSM480201 extract 1	2164.02	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	2874.93	2e-4	P
	GSM480217 extract 1	2839.74	2e-4	P
	GSM480216 extract 1	2833.82	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	1684.02	2e-4	P
	GSM480182 extract 1	1088.09	2e-4	P
	GSM480180 extract 1	2055.63	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	1225.61	2e-4	P
	GSM480167 extract 1	678.458	2e-4	P
	GSM480165 extract 1	775.777	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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