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Expression Template: Les.5710.1.S1_at

Template Basic Information

Template name:	Les.5710.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U563115
External db links:	GenBank: BT014427.1

Annotations for unigene SGN-U563115 (manual: 0 | blast: 3 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157336045\|emb\|CAO61875.1\|	555	4e-156	81.71	984 bp (80.9%)	2
Description:	unnamed
arabidopsis	blastx	At1G21780.1	503	7e-143	75.23	981 bp (80.7%)	2
Description:	BTB/POZ domain-containing protein \| chr1:7652465-7653855 FORWARD
swissprot	blastx	Q94420	80.9	1e-14	34.03	429 bp (35.3%)	2
Description:	Protein maternal effect lethal 26 OS=Caenorhabditis elegans GN=mel-26 PE=1 SV=2

GO Terms Annotations

GO:0005515protein binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5710.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.5710.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.5710.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.5710.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.5710.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.5710.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.5710.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.5710.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.5710.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.5710.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.5710.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	293.75	293.75	6.91	0.02
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	601.94	601.94	182.88	0.30
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	535.36	535.36	101.16	0.19
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	636.96	512.00	301.15	0.47
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	661.16	658.32	12.26	0.02
	Gene expression data from Aft red fruit peel	exocarp	3	3	1161.58	1157.20	21.89	0.02
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	651.59	642.65	76.39	0.12
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1268.17	1265.49	108.13	0.09
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	463.74	495.52	163.05	0.35
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	742.50	742.50	159.54	0.21
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	711.28	720.24	65.32	0.09
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	529.12	529.12	27.12	0.05
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	601.32	484.26	285.64	0.48
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	367.94	367.94	57.77	0.16
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	261.28	261.28	27.85	0.11
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	435.07	442.65	44.10	0.10
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	328.40	327.30	26.39	0.08
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	677.61	681.84	12.08	0.02
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	894.46	893.37	4.42	0.00
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	667.22	674.52	60.43	0.09
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1093.30	1121.39	52.07	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	489.18	446.27	86.80	0.18
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	603.66	597.49	33.98	0.06
	Gene expression data from Micro-Tom root	root	3	3	397.10	410.98	57.33	0.14

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	298.638	2e-4	P
	GSM480170 extract 1	288.866	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	472.625	2e-4	P
	GSM480186 extract 1	731.252	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	606.89	2e-4	P
	GSM480183 extract 1	463.83	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	1082.94	2e-4	P
	GSM480224 extract 1	470.136	2e-4	P
	GSM480225 extract 1	440.918	2e-4	P
	GSM480226 extract 1	553.858	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	658.317	2e-4	P
	GSM480208 extract 1	674.589	2e-4	P
	GSM480207 extract 1	650.56	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1142.21	2e-4	P
	GSM480209 extract 1	1157.2	2e-4	P
	GSM480211 extract 1	1185.33	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	642.651	2e-4	P
	GSM480219 extract 1	580.06	2e-4	P
	GSM480220 extract 1	732.049	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	1161.4	2e-4	P
	GSM480221 extract 1	1377.62	2e-4	P
	GSM480223 extract 1	1265.49	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	608.561	2e-4	P
	GSM480192 extract 1	495.521	2e-4	P
	GSM480190 extract 1	287.137	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	629.691	2e-4	P
	GSM480196 extract 1	855.311	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	771.661	2e-4	P
	GSM480198 extract 1	641.938	2e-4	P
	GSM480199 extract 1	720.243	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	548.298	2e-4	P
	GSM480194 extract 1	509.943	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	440.687	2e-4	P
	GSM480229 extract 1	413.304	2e-4	P
	GSM480231 extract 1	1023.47	2e-4	P
	GSM480230 extract 1	527.84	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	327.093	2e-4	P
	GSM480169 extract 1	408.795	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	241.587	2e-4	P
	GSM480173 extract 1	280.979	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	442.648	2e-4	P
	GSM480176 extract 1	387.681	2e-4	P
	GSM480175 extract 1	474.891	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	302.583	2e-4	P
	GSM480179 extract 1	355.328	2e-4	P
	GSM480178 extract 1	327.302	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	687.01	2e-4	P
	GSM480201 extract 1	681.835	2e-4	P
	GSM480202 extract 1	663.986	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	893.373	2e-4	P
	GSM480204 extract 1	899.321	2e-4	P
	GSM480205 extract 1	890.686	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	674.524	2e-4	P
	GSM480212 extract 1	723.659	2e-4	P
	GSM480214 extract 1	603.472	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	1033.22	2e-4	P
	GSM480215 extract 1	1121.39	2e-4	P
	GSM480217 extract 1	1125.29	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	432.197	2e-4	P
	GSM480181 extract 1	589.072	2e-4	P
	GSM480182 extract 1	446.266	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	597.49	2e-4	P
	GSM480187 extract 1	573.19	2e-4	P
	GSM480189 extract 1	640.307	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	410.985	2e-4	P
	GSM480165 extract 1	334.098	2e-4	P
	GSM480166 extract 1	446.202	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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