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Expression Template: Les.4921.1.S1_at

Template Basic Information

Template name:	Les.4921.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U575053
External db links:	GenBank: AW979392

Annotations for unigene SGN-U575053 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|118484025\|gb\|ABK93899.1\|	275	4e-72	80.72	486 bp (48.0%)	1
Description:	unknown
arabidopsis	blastx	At2G42610.1	263	1e-70	85.31	420 bp (41.5%)	1
Description:	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G07090.1); similar to Protein of un&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4921.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4921.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4921.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4921.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4921.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4921.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4921.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4921.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4921.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4921.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4921.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	36.61	36.61	18.24	0.50
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1039.68	1032.47	55.21	0.05
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1115.83	1137.46	53.11	0.05
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	208.07	208.07	60.64	0.29
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	736.71	759.85	45.30	0.06
	Gene expression data from Aft red fruit peel	exocarp	3	3	168.11	167.53	5.05	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	825.05	806.78	51.54	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	359.30	372.74	23.45	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	350.30	356.48	28.94	0.08
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	106.38	106.38	3.71	0.03
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	205.28	188.04	49.69	0.24
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	122.25	122.25	1.65	0.01
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	166.75	115.34	125.56	0.75
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	671.27	671.27	117.51	0.18
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	94.66	94.66	4.45	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	78.81	80.71	17.88	0.23
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	108.15	94.62	32.33	0.30
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	353.48	363.78	28.00	0.08
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	620.21	634.60	32.41	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	604.71	630.05	216.23	0.36
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	313.74	313.08	3.68	0.01
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	301.89	301.89	95.93	0.32
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	283.69	208.38	181.76	0.64
	Gene expression data from Micro-Tom root	root	3	3	126.75	133.96	23.99	0.19

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	49.5031	0.001	P
	GSM480170 extract 1	23.709	0.014	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	1032.47	2e-4	P
	GSM480201 extract 1	988.429	2e-4	P
	GSM480202 extract 1	1098.14	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1154.71	2e-4	P
	GSM480213 extract 1	1055.32	2e-4	P
	GSM480214 extract 1	1137.46	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	165.197	2e-4	P
	GSM480186 extract 1	250.95	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	759.852	2e-4	P
	GSM480208 extract 1	765.771	2e-4	P
	GSM480207 extract 1	684.512	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	167.53	2e-4	P
	GSM480209 extract 1	163.377	2e-4	P
	GSM480211 extract 1	173.435	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	883.244	2e-4	P
	GSM480220 extract 1	785.136	2e-4	P
	GSM480219 extract 1	806.781	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	372.952	2e-4	P
	GSM480221 extract 1	372.74	2e-4	P
	GSM480222 extract 1	332.223	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	318.78	2e-4	P
	GSM480191 extract 1	375.655	2e-4	P
	GSM480192 extract 1	356.476	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	103.762	7e-4	P
	GSM480196 extract 1	109.004	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	261.295	2e-4	P
	GSM480198 extract 1	166.522	2e-4	P
	GSM480199 extract 1	188.035	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	121.078	2e-4	P
	GSM480194 extract 1	123.418	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	107.534	2e-4	P
	GSM480229 extract 1	82.8809	7e-4	P
	GSM480230 extract 1	123.153	2e-4	P
	GSM480231 extract 1	353.439	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	588.176	2e-4	P
	GSM480168 extract 1	754.367	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	91.5106	2e-4	P
	GSM480173 extract 1	97.8081	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	95.6694	7e-4	P
	GSM480176 extract 1	80.7056	2e-4	P
	GSM480175 extract 1	60.0675	0.003	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	94.6241	2e-4	P
	GSM480177 extract 1	84.7818	2e-4	P
	GSM480179 extract 1	145.051	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	321.783	2e-4	P
	GSM480203 extract 1	363.777	2e-4	P
	GSM480205 extract 1	374.871	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	634.596	2e-4	P
	GSM480215 extract 1	642.935	2e-4	P
	GSM480216 extract 1	583.097	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	807.159	2e-4	P
	GSM480180 extract 1	376.923	2e-4	P
	GSM480181 extract 1	630.048	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	313.084	2e-4	P
	GSM480189 extract 1	317.706	2e-4	P
	GSM480188 extract 1	310.432	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	369.723	2e-4	P
	GSM480183 extract 1	234.058	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	194.403	2e-4	P
	GSM480225 extract 1	164.013	2e-4	P
	GSM480226 extract 1	222.368	2e-4	P
	GSM480227 extract 1	553.982	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	99.9824	2e-4	P
	GSM480166 extract 1	133.956	2e-4	P
	GSM480167 extract 1	146.314	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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