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Expression Template: Les.4844.1.S1_at

Template Basic Information

Template name:	Les.4844.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	GenBank: BI921923

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4844.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4844.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4844.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4844.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4844.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
Les.4844.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4844.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4844.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4844.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4844.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4844.1.S1_at:ProbePair4	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	364.22	364.22	228.41	0.63
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	22.76	20.52	5.20	0.23
	Gene expression data from Aft red fruit flesh	endocarp	3	3	24.56	25.35	4.69	0.19
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	52.60	54.69	5.21	0.10
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	31.79	31.79	13.10	0.41
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	41.10	38.76	13.39	0.33
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	189.50	201.64	26.56	0.14
	Gene expression data from Aft red fruit peel	exocarp	3	3	237.73	235.64	6.70	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	132.50	126.76	16.36	0.12
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	15.52	12.93	6.49	0.42
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	894.58	793.90	461.15	0.52
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	186.72	186.72	0.29	0.00
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	145.22	143.71	30.90	0.21
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	62.11	62.11	0.40	0.01
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	129.00	128.71	80.01	0.62
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	243.50	243.50	64.52	0.26
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	80.89	80.89	2.84	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1053.54	1155.65	190.74	0.18
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	156.90	151.37	39.84	0.25
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	11.37	13.32	7.97	0.70
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	144.94	141.15	54.39	0.38
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	42.48	42.48	6.88	0.16
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	19.67	19.96	6.45	0.33
	Gene expression data from Micro-Tom root	root	3	3	112.24	126.77	27.83	0.25

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	525.736	2e-4	P
	GSM480171 extract 1	202.711	0.002	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	28.7	0.081	A
	GSM480201 extract 1	20.5238	0.024	P
	GSM480202 extract 1	19.0426	0.030	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	19.5219	0.081	A
	GSM480204 extract 1	25.3456	0.024	P
	GSM480205 extract 1	28.8006	0.046	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	54.6886	0.019	P
	GSM480212 extract 1	56.4502	0.014	P
	GSM480214 extract 1	46.6725	0.011	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	41.0544	0.019	P
	GSM480186 extract 1	22.5226	0.095	A
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	38.7643	0.024	P
	GSM480188 extract 1	55.5089	0.030	P
	GSM480187 extract 1	29.0389	0.024	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	159.04	0.002	P
	GSM480207 extract 1	201.644	0.001	P
	GSM480208 extract 1	207.806	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	245.229	0.001	P
	GSM480210 extract 1	235.637	2e-4	P
	GSM480211 extract 1	232.334	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	119.777	0.002	P
	GSM480219 extract 1	126.761	7e-4	P
	GSM480220 extract 1	150.952	0.002	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	10.7258	0.334	A
	GSM480222 extract 1	12.9301	0.024	P
	GSM480223 extract 1	22.9097	0.046	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	793.902	2e-4	P
	GSM480190 extract 1	492.075	2e-4	P
	GSM480192 extract 1	1397.75	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	186.927	0.002	P
	GSM480196 extract 1	186.516	0.001	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	176.851	0.001	P
	GSM480199 extract 1	143.712	0.001	P
	GSM480197 extract 1	115.112	0.001	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	61.8202	0.014	P
	GSM480194 extract 1	62.3909	0.004	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	104.089	0.002	P
	GSM480228 extract 1	224.126	7e-4	P
	GSM480229 extract 1	153.339	2e-4	P
	GSM480231 extract 1	34.4263	0.011	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	289.125	7e-4	P
	GSM480169 extract 1	197.875	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	78.8799	0.006	P
	GSM480173 extract 1	82.8963	0.006	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	1171.49	2e-4	P
	GSM480174 extract 1	833.492	2e-4	P
	GSM480175 extract 1	1155.65	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	199.215	0.001	P
	GSM480178 extract 1	151.369	0.003	P
	GSM480179 extract 1	120.122	0.002	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	18.1949	0.171	A
	GSM480216 extract 1	2.60747	0.666	A
	GSM480217 extract 1	13.3223	0.399	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	141.15	0.004	P
	GSM480181 extract 1	92.551	0.003	P
	GSM480182 extract 1	201.131	0.001	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	37.6165	0.046	P
	GSM480184 extract 1	47.3456	0.024	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	25.8467	0.019	P
	GSM480225 extract 1	15.4265	0.081	A
	GSM480224 extract 1	24.4856	0.081	A
	GSM480226 extract 1	12.9404	0.056	M
Gene expression data from Micro-Tom root	GSM480165 extract 1	129.8	7e-4	P
	GSM480167 extract 1	80.1472	0.002	P
	GSM480166 extract 1	126.766	0.001	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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