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Expression Template: Les.4763.1.S1_at

Template Basic Information

Template name:	Les.4763.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U570128
External db links:	GenBank: BT013929.1

Annotations for unigene SGN-U570128 (manual: 0 | blast: 3 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157338578\|emb\|CAO41929.1\|	713		73.33	1485 bp (54.1%)	1
Description:	unnamed
arabidopsis	blastx	At5G44740.2	704		55.54	2154 bp (78.4%)	1
Description:	UMUC-like DNA repair family protein \| chr5:18065130-18069006 REVERSE
swissprot	blastx	Q9Y253	308	1e-82	40.24	1437 bp (52.3%)	1
Description:	DNA polymerase eta OS=Homo sapiens GN=POLH

GO Terms Annotations

GO:0006281DNA repair

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4763.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4763.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4763.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4763.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4763.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4763.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4763.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4763.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4763.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4763.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4763.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	50.90	50.90	6.19	0.12
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	145.82	148.88	19.91	0.14
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	186.13	187.57	7.33	0.04
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	125.92	118.34	14.42	0.11
	Gene expression data from Aft red fruit peel	exocarp	3	3	127.17	132.53	10.25	0.08
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	122.64	119.15	9.28	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	235.18	239.39	11.98	0.05
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	116.41	111.73	16.79	0.14
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	155.04	155.04	6.10	0.04
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	181.59	179.18	53.23	0.29
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	101.96	101.96	3.08	0.03
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	141.43	144.60	17.40	0.12
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	47.60	47.60	7.36	0.15
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	134.31	134.31	4.92	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	137.13	135.67	12.76	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	130.22	121.83	20.66	0.16
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	119.20	119.71	0.88	0.01
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	103.05	97.41	13.37	0.13
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	126.16	138.63	41.65	0.33
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	105.91	105.91	43.99	0.42
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	122.35	132.85	23.09	0.19
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	66.24	66.24	5.45	0.08
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	142.27	147.06	16.90	0.12
	Gene expression data from Micro-Tom root	root	3	3	121.77	126.88	18.65	0.15

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	55.2718	0.002	P
	GSM480171 extract 1	46.524	0.004	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	148.875	2e-4	P
	GSM480212 extract 1	164.021	0.001	P
	GSM480214 extract 1	124.559	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	192.641	2e-4	P
	GSM480216 extract 1	178.189	0.001	P
	GSM480217 extract 1	187.569	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	142.55	7e-4	P
	GSM480207 extract 1	118.34	2e-4	P
	GSM480208 extract 1	116.877	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	133.623	2e-4	P
	GSM480210 extract 1	115.349	2e-4	P
	GSM480211 extract 1	132.527	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	115.618	2e-4	P
	GSM480218 extract 1	133.156	2e-4	P
	GSM480219 extract 1	119.15	7e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	239.386	2e-4	P
	GSM480222 extract 1	244.485	2e-4	P
	GSM480221 extract 1	221.658	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	111.731	2e-4	P
	GSM480190 extract 1	135.045	2e-4	P
	GSM480192 extract 1	102.462	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	159.357	2e-4	P
	GSM480196 extract 1	150.724	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	129.609	2e-4	P
	GSM480197 extract 1	235.98	2e-4	P
	GSM480199 extract 1	179.179	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	104.132	2e-4	P
	GSM480194 extract 1	99.7814	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	118.523	2e-4	P
	GSM480229 extract 1	157.994	2e-4	P
	GSM480228 extract 1	137.933	2e-4	P
	GSM480231 extract 1	151.259	0.001	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	42.3923	7e-4	P
	GSM480168 extract 1	52.8047	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	137.794	7e-4	P
	GSM480172 extract 1	130.833	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	135.674	7e-4	P
	GSM480175 extract 1	150.554	2e-4	P
	GSM480176 extract 1	125.149	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	115.071	2e-4	P
	GSM480177 extract 1	153.758	2e-4	P
	GSM480179 extract 1	121.828	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	119.709	0.001	P
	GSM480202 extract 1	119.708	7e-4	P
	GSM480201 extract 1	118.182	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	93.4232	2e-4	P
	GSM480203 extract 1	118.317	2e-4	P
	GSM480204 extract 1	97.4127	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	160.151	2e-4	P
	GSM480182 extract 1	79.6949	7e-4	P
	GSM480181 extract 1	138.627	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	137.011	2e-4	P
	GSM480186 extract 1	74.8023	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	132.848	7e-4	P
	GSM480187 extract 1	95.8768	2e-4	P
	GSM480189 extract 1	138.316	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	70.0922	2e-4	P
	GSM480184 extract 1	62.3907	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	153.681	2e-4	P
	GSM480224 extract 1	155.88	2e-4	P
	GSM480225 extract 1	119.076	2e-4	P
	GSM480227 extract 1	140.439	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	101.102	2e-4	P
	GSM480165 extract 1	126.879	2e-4	P
	GSM480167 extract 1	137.329	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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