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Expression Template: Les.5657.1.S1_at

Template Basic Information

Template name:	Les.5657.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U565925
External db links:	GenBank: BT014331.1

Annotations for unigene SGN-U565925 (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157335368\|emb\|CAO61198.1\|	639		77.92	1209 bp (69.7%)	2
Description:	unnamed
arabidopsis	blastx	At1G19360.1	587	1e-167	72.26	1281 bp (73.8%)	2
Description:	similar to RRA2 (REDUCED RESIDUAL ARABINOSE 2) [Arabidopsis thaliana] (TAIR:AT1G75110.1); simi&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0005554molecular_function unknown
GO:0005783endoplasmic reticulum

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5657.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
Les.5657.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.5657.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.5657.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.5657.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.5657.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.5657.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.5657.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.5657.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.5657.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.5657.1.S1_at:ProbePair8	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	228.68	228.68	49.14	0.21
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	474.38	500.79	56.27	0.12
	Gene expression data from Aft red fruit flesh	endocarp	3	3	522.25	510.02	47.27	0.09
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	292.11	292.11	26.96	0.09
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	382.86	382.86	112.41	0.29
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	464.26	460.53	11.13	0.02
	Gene expression data from Aft red fruit peel	exocarp	3	3	492.69	493.53	23.13	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	407.09	406.90	46.75	0.11
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	446.48	457.84	31.17	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	476.91	556.15	145.64	0.31
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	202.90	202.90	37.82	0.19
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	288.79	274.01	33.20	0.11
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	245.96	245.96	67.75	0.28
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	234.83	228.94	47.69	0.20
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	412.83	412.83	46.24	0.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	230.91	230.91	10.03	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	261.12	273.94	23.44	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	333.96	325.40	26.74	0.08
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	386.15	387.45	8.51	0.02
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	557.81	552.54	35.94	0.06
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	426.56	437.88	95.87	0.22
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	374.06	381.30	13.61	0.04
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	327.80	323.48	51.66	0.16
	Gene expression data from Micro-Tom root	root	3	3	625.63	623.47	23.34	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	263.429	2e-4	P
	GSM480171 extract 1	193.932	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	512.593	2e-4	P
	GSM480202 extract 1	409.762	2e-4	P
	GSM480200 extract 1	500.787	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	510.016	2e-4	P
	GSM480203 extract 1	482.307	2e-4	P
	GSM480205 extract 1	574.44	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	311.175	2e-4	P
	GSM480186 extract 1	273.044	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	462.348	2e-4	P
	GSM480183 extract 1	303.375	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	455.473	2e-4	P
	GSM480207 extract 1	476.778	2e-4	P
	GSM480208 extract 1	460.534	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	469.154	2e-4	P
	GSM480209 extract 1	493.529	2e-4	P
	GSM480211 extract 1	515.395	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	453.94	2e-4	P
	GSM480219 extract 1	360.431	2e-4	P
	GSM480220 extract 1	406.898	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	470.375	2e-4	P
	GSM480222 extract 1	411.216	2e-4	P
	GSM480223 extract 1	457.839	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	308.824	2e-4	P
	GSM480191 extract 1	565.745	2e-4	P
	GSM480192 extract 1	556.149	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	229.648	2e-4	P
	GSM480196 extract 1	176.162	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	265.55	2e-4	P
	GSM480198 extract 1	326.818	2e-4	P
	GSM480199 extract 1	274.014	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	293.868	2e-4	P
	GSM480193 extract 1	198.062	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	238.73	2e-4	P
	GSM480230 extract 1	219.144	2e-4	P
	GSM480228 extract 1	183.737	2e-4	P
	GSM480231 extract 1	297.697	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	445.519	2e-4	P
	GSM480169 extract 1	380.132	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	238.001	2e-4	P
	GSM480172 extract 1	223.818	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	275.351	2e-4	P
	GSM480175 extract 1	273.936	2e-4	P
	GSM480176 extract 1	234.063	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	325.397	2e-4	P
	GSM480178 extract 1	363.928	2e-4	P
	GSM480179 extract 1	312.556	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	393.938	2e-4	P
	GSM480214 extract 1	387.45	2e-4	P
	GSM480213 extract 1	377.062	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	524.793	2e-4	P
	GSM480216 extract 1	596.095	2e-4	P
	GSM480217 extract 1	552.535	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	516.273	2e-4	P
	GSM480180 extract 1	325.53	2e-4	P
	GSM480182 extract 1	437.885	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	358.362	2e-4	P
	GSM480188 extract 1	381.301	2e-4	P
	GSM480189 extract 1	382.533	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	324.177	2e-4	P
	GSM480226 extract 1	322.788	2e-4	P
	GSM480225 extract 1	269.147	2e-4	P
	GSM480227 extract 1	395.083	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	623.466	2e-4	P
	GSM480165 extract 1	603.444	2e-4	P
	GSM480166 extract 1	649.979	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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