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Expression Template: Les.1640.1.A1_at

Template Basic Information

Template name:	Les.1640.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U586014
External db links:	GenBank: BT013661.1

Annotations for unigene SGN-U586014 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157341475\|emb\|CAO62030.1\|	343	6e-92	50.25	1194 bp (43.1%)	3
Description:	unnamed
arabidopsis	blastx	At1G73200.1	343	3e-94	43.41	1461 bp (52.7%)	3
Description:	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17820.1); similar to unknown prote&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.1640.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.1640.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.1640.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.1640.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.1640.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.1640.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.1640.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.1640.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.1640.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.1640.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.1640.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	381.32	381.32	184.35	0.48
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	338.46	340.29	25.90	0.08
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	373.55	373.55	32.39	0.09
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	591.82	593.72	123.45	0.21
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	472.62	448.04	49.27	0.10
	Gene expression data from Aft red fruit peel	exocarp	3	3	308.44	300.90	16.63	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	355.37	351.66	48.17	0.14
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	489.90	483.80	21.89	0.04
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	354.82	375.30	103.38	0.29
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	422.85	422.85	4.01	0.01
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	446.66	475.24	90.80	0.20
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	299.72	299.72	35.85	0.12
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	618.17	627.86	55.36	0.09
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	503.37	503.37	346.91	0.69
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	499.26	499.26	16.24	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	333.40	359.55	59.54	0.18
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	243.63	239.50	31.84	0.13
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	388.59	396.93	31.34	0.08
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	353.19	352.51	11.86	0.03
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	388.88	403.06	50.30	0.13
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	464.13	446.08	88.00	0.19
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	485.49	485.49	58.25	0.12
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	548.98	539.85	62.28	0.11
	Gene expression data from Micro-Tom root	root	3	3	491.32	487.60	84.41	0.17

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	511.679	2e-4	P
	GSM480171 extract 1	250.965	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	311.701	2e-4	P
	GSM480202 extract 1	340.29	2e-4	P
	GSM480201 extract 1	363.399	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	396.455	2e-4	P
	GSM480184 extract 1	350.644	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	733.425	2e-4	P
	GSM480224 extract 1	641.233	2e-4	P
	GSM480227 extract 1	446.413	2e-4	P
	GSM480226 extract 1	546.211	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	529.336	2e-4	P
	GSM480206 extract 1	448.044	2e-4	P
	GSM480208 extract 1	440.468	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	296.912	2e-4	P
	GSM480210 extract 1	327.51	2e-4	P
	GSM480211 extract 1	300.898	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	351.659	2e-4	P
	GSM480219 extract 1	309.171	2e-4	P
	GSM480220 extract 1	405.289	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	514.199	2e-4	P
	GSM480222 extract 1	471.716	2e-4	P
	GSM480223 extract 1	483.801	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	375.3	2e-4	P
	GSM480190 extract 1	242.731	2e-4	P
	GSM480192 extract 1	446.415	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	425.685	7e-4	P
	GSM480195 extract 1	420.015	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	345.014	2e-4	P
	GSM480198 extract 1	475.235	2e-4	P
	GSM480199 extract 1	519.747	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	325.066	2e-4	P
	GSM480194 extract 1	274.363	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	659.158	2e-4	P
	GSM480228 extract 1	667.049	2e-4	P
	GSM480231 extract 1	596.572	2e-4	P
	GSM480230 extract 1	549.914	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	258.07	0.001	P
	GSM480168 extract 1	748.677	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	487.78	2e-4	P
	GSM480173 extract 1	510.748	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	265.261	2e-4	P
	GSM480174 extract 1	375.397	2e-4	P
	GSM480175 extract 1	359.552	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	214.057	2e-4	P
	GSM480178 extract 1	239.502	2e-4	P
	GSM480179 extract 1	277.33	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	396.928	7e-4	P
	GSM480204 extract 1	414.919	7e-4	P
	GSM480205 extract 1	353.928	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	365.386	2e-4	P
	GSM480213 extract 1	341.688	2e-4	P
	GSM480214 extract 1	352.509	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	403.06	2e-4	P
	GSM480216 extract 1	430.572	2e-4	P
	GSM480217 extract 1	333.009	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	446.077	2e-4	P
	GSM480181 extract 1	559.76	2e-4	P
	GSM480182 extract 1	386.555	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	444.301	7e-4	P
	GSM480185 extract 1	526.676	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	491.77	2e-4	P
	GSM480188 extract 1	539.848	2e-4	P
	GSM480189 extract 1	615.331	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	577.528	2e-4	P
	GSM480166 extract 1	487.602	2e-4	P
	GSM480167 extract 1	408.841	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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