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Expression Template: Les.4475.1.S1_at

Template Basic Information

Template name:	Les.4475.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U571295 SGN-U571295 SGN-U571295 SGN-U571295 SGN-U571295
External db links:	GenBank: AW224748

Annotations for unigene SGN-U571295 (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|41058336\|gb\|AAR99160.1\|	642		100	954 bp (61.7%)	1
Description:	dsRNA-binding protein [Solanum lycopersicum]
arabidopsis	blastx	At1G09700.1	91.3	1e-18	48	288 bp (18.6%)	1
Description:	Symbols: DRB1, HYL1 \| HYL1 (HYPONASTIC LEAVES 1) \| chr1:3137962-3140120 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0003725double-stranded RNA binding
GO:0005622intracellular

Annotations for unigene SGN-U571295 (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|41058336\|gb\|AAR99160.1\|	642		100	954 bp (61.7%)	1
Description:	dsRNA-binding protein [Solanum lycopersicum]
arabidopsis	blastx	At1G09700.1	91.3	1e-18	48	288 bp (18.6%)	1
Description:	Symbols: DRB1, HYL1 \| HYL1 (HYPONASTIC LEAVES 1) \| chr1:3137962-3140120 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0003725double-stranded RNA binding
GO:0005622intracellular

Annotations for unigene SGN-U571295 (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|41058336\|gb\|AAR99160.1\|	642		100	954 bp (61.7%)	1
Description:	dsRNA-binding protein [Solanum lycopersicum]
arabidopsis	blastx	At1G09700.1	91.3	1e-18	48	288 bp (18.6%)	1
Description:	Symbols: DRB1, HYL1 \| HYL1 (HYPONASTIC LEAVES 1) \| chr1:3137962-3140120 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0005622intracellular
GO:0003725double-stranded RNA binding

Annotations for unigene SGN-U571295 (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|41058336\|gb\|AAR99160.1\|	642		100	954 bp (61.7%)	1
Description:	dsRNA-binding protein [Solanum lycopersicum]
arabidopsis	blastx	At1G09700.1	91.3	1e-18	48	288 bp (18.6%)	1
Description:	Symbols: DRB1, HYL1 \| HYL1 (HYPONASTIC LEAVES 1) \| chr1:3137962-3140120 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0003725double-stranded RNA binding
GO:0005622intracellular

Annotations for unigene SGN-U571295 (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|41058336\|gb\|AAR99160.1\|	642		100	954 bp (61.7%)	1
Description:	dsRNA-binding protein [Solanum lycopersicum]
arabidopsis	blastx	At1G09700.1	91.3	1e-18	48	288 bp (18.6%)	1
Description:	Symbols: DRB1, HYL1 \| HYL1 (HYPONASTIC LEAVES 1) \| chr1:3137962-3140120 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0003725double-stranded RNA binding
GO:0005622intracellular

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4475.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4475.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4475.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4475.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4475.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4475.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4475.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4475.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4475.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4475.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4475.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	373.15	373.15	30.50	0.08
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	366.92	363.21	13.45	0.04
	Gene expression data from Aft red fruit flesh	endocarp	3	3	823.20	839.48	46.71	0.06
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	349.88	341.67	17.45	0.05
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	683.33	683.33	130.29	0.19
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	551.66	538.69	38.98	0.07
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	930.17	939.46	102.73	0.11
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	404.95	412.28	31.30	0.08
	Gene expression data from Aft red fruit peel	exocarp	3	3	819.79	860.70	72.42	0.09
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	414.31	413.98	14.59	0.04
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	683.69	694.80	44.55	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	490.96	523.21	68.89	0.14
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	814.03	814.03	120.97	0.15
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	591.86	580.29	73.19	0.12
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	776.74	776.74	89.54	0.12
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	694.00	690.09	60.99	0.09
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	438.18	438.18	1.02	0.00
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	446.48	446.48	8.10	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	425.25	383.19	85.96	0.20
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	384.14	389.06	36.60	0.10
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	444.51	430.48	37.59	0.08
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	413.72	401.52	40.19	0.10
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	557.69	557.69	135.84	0.24
	Gene expression data from Micro-Tom root	root	3	3	348.42	358.06	56.68	0.16

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	394.715	7e-4	P
	GSM480171 extract 1	351.578	7e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	355.722	7e-4	P
	GSM480202 extract 1	381.835	7e-4	P
	GSM480201 extract 1	363.212	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	859.58	2e-4	P
	GSM480204 extract 1	839.48	7e-4	P
	GSM480205 extract 1	770.529	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	341.671	7e-4	P
	GSM480213 extract 1	338.053	7e-4	P
	GSM480212 extract 1	369.93	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	775.459	2e-4	P
	GSM480185 extract 1	591.197	7e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	538.693	7e-4	P
	GSM480188 extract 1	595.476	7e-4	P
	GSM480189 extract 1	520.824	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	973.079	7e-4	P
	GSM480224 extract 1	905.842	7e-4	P
	GSM480226 extract 1	1041.41	2e-4	P
	GSM480227 extract 1	800.351	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	412.282	2e-4	P
	GSM480207 extract 1	370.631	7e-4	P
	GSM480208 extract 1	431.925	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	862.502	2e-4	P
	GSM480209 extract 1	736.167	7e-4	P
	GSM480210 extract 1	860.698	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	399.886	7e-4	P
	GSM480220 extract 1	429.068	7e-4	P
	GSM480219 extract 1	413.98	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	694.796	2e-4	P
	GSM480221 extract 1	634.641	7e-4	P
	GSM480223 extract 1	721.632	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	411.861	2e-4	P
	GSM480191 extract 1	537.816	7e-4	P
	GSM480192 extract 1	523.208	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	728.492	2e-4	P
	GSM480196 extract 1	899.573	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	525.148	7e-4	P
	GSM480197 extract 1	670.152	7e-4	P
	GSM480199 extract 1	580.292	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	713.43	2e-4	P
	GSM480194 extract 1	840.061	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	624.548	7e-4	P
	GSM480229 extract 1	702.952	7e-4	P
	GSM480230 extract 1	771.294	7e-4	P
	GSM480231 extract 1	677.22	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	438.899	7e-4	P
	GSM480168 extract 1	437.457	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	452.209	2e-4	P
	GSM480172 extract 1	440.756	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	524.145	7e-4	P
	GSM480175 extract 1	383.188	2e-4	P
	GSM480174 extract 1	368.413	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	389.057	7e-4	P
	GSM480177 extract 1	418.039	2e-4	P
	GSM480179 extract 1	345.335	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	415.96	7e-4	P
	GSM480215 extract 1	487.099	2e-4	P
	GSM480217 extract 1	430.479	7e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	458.599	7e-4	P
	GSM480180 extract 1	401.525	7e-4	P
	GSM480182 extract 1	381.049	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	461.636	2e-4	P
	GSM480184 extract 1	653.738	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	358.063	7e-4	P
	GSM480166 extract 1	287.534	7e-4	P
	GSM480167 extract 1	399.648	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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