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Expression Template: Les.52.1.S1_at

Template Basic Information

Template name:	Les.52.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577568
External db links:	GenBank: X76714.1

Annotations for unigene SGN-U577568 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|1173234\|sp\|P46301\|RS25_SOLLC	143	9e-33	100	222 bp (37.4%)	3
Description:	RecName:
arabidopsis	blastx	At2G21580.2	127	4e-30	83.78	222 bp (37.4%)	3
Description:	structural constituent of ribosome \| chr2:9243709-9244590 FORWARD
swissprot	blastx	P46301	143	7e-34	100	222 bp (37.4%)	3
Description:	40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (10)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.52.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.52.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.52.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.52.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.52.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.52.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.52.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.52.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.52.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.52.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1785.56	1785.56	115.87	0.06
	Gene expression data from Aft red fruit flesh	endocarp	3	3	2370.80	2378.54	22.17	0.01
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1185.08	1207.91	96.89	0.08
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	2179.64	2140.79	279.42	0.13
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	2505.71	2505.71	357.10	0.14
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1283.14	1292.13	44.50	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	2537.17	2525.29	52.69	0.02
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1224.72	1221.86	35.39	0.03
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1822.35	1815.52	19.47	0.01
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2686.42	2724.18	259.79	0.10
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	2755.16	2755.16	148.96	0.05
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2488.95	2540.42	278.05	0.11
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2950.60	2950.60	150.55	0.05
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	3123.97	3322.24	629.89	0.20
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1897.99	1897.99	34.58	0.02
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1908.38	1908.38	70.99	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1982.23	1975.53	26.05	0.01
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2912.83	3020.27	272.66	0.09
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1283.71	1346.58	115.01	0.09
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1510.14	1527.60	59.47	0.04
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	2410.48	2371.60	152.75	0.06
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	2491.73	2491.73	258.96	0.10
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	3129.92	3416.34	681.30	0.22
	Gene expression data from Micro-Tom root	root	3	3	2856.29	2884.39	100.59	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	1703.63	5e-4	P
	GSM480171 extract 1	1867.5	5e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	2388.07	5e-4	P
	GSM480204 extract 1	2345.8	5e-4	P
	GSM480205 extract 1	2378.54	5e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1078.81	5e-4	P
	GSM480214 extract 1	1207.91	5e-4	P
	GSM480213 extract 1	1268.52	5e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	2140.79	5e-4	P
	GSM480182 extract 1	2476.46	5e-4	P
	GSM480181 extract 1	1921.68	5e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	2758.21	5e-4	P
	GSM480186 extract 1	2253.2	5e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	1234.84	5e-4	P
	GSM480208 extract 1	1292.13	5e-4	P
	GSM480206 extract 1	1322.46	5e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	2491.43	5e-4	P
	GSM480210 extract 1	2525.29	5e-4	P
	GSM480211 extract 1	2594.78	5e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	1190.85	5e-4	P
	GSM480220 extract 1	1261.46	5e-4	P
	GSM480219 extract 1	1221.86	5e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1815.52	5e-4	P
	GSM480222 extract 1	1807.21	5e-4	P
	GSM480223 extract 1	1844.31	5e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	2409.82	5e-4	P
	GSM480190 extract 1	2724.18	5e-4	P
	GSM480192 extract 1	2925.26	5e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	2649.83	5e-4	P
	GSM480195 extract 1	2860.49	5e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	2737.67	5e-4	P
	GSM480198 extract 1	2540.42	5e-4	P
	GSM480199 extract 1	2188.76	5e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	3057.06	5e-4	P
	GSM480193 extract 1	2844.15	5e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	3468.13	5e-4	P
	GSM480228 extract 1	3176.35	5e-4	P
	GSM480229 extract 1	3629.43	5e-4	P
	GSM480231 extract 1	2221.98	5e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1922.45	5e-4	P
	GSM480169 extract 1	1873.54	5e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	1858.18	5e-4	P
	GSM480172 extract 1	1958.57	5e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	2010.98	5e-4	P
	GSM480174 extract 1	1975.53	5e-4	P
	GSM480176 extract 1	1960.19	5e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	3115.4	5e-4	P
	GSM480177 extract 1	2602.81	5e-4	P
	GSM480179 extract 1	3020.27	5e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	1346.58	5e-4	P
	GSM480201 extract 1	1353.57	5e-4	P
	GSM480202 extract 1	1150.97	5e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	1558.92	5e-4	P
	GSM480215 extract 1	1443.89	5e-4	P
	GSM480216 extract 1	1527.6	5e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	2280.92	5e-4	P
	GSM480187 extract 1	2578.91	5e-4	P
	GSM480188 extract 1	2371.6	5e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	2674.84	5e-4	P
	GSM480184 extract 1	2308.61	5e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	3450.71	5e-4	P
	GSM480225 extract 1	3572.18	5e-4	P
	GSM480226 extract 1	3381.97	5e-4	P
	GSM480227 extract 1	2114.8	5e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	2744.64	5e-4	P
	GSM480166 extract 1	2884.39	5e-4	P
	GSM480165 extract 1	2939.84	5e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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