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Expression Template: LesAffx.43685.2.S1_s_at

Template Basic Information

Template name:	LesAffx.43685.2.S1_s_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579242
External db links:	GenBank: X55681.1

Annotations for unigene SGN-U579242 (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7488999\|pir\|\|S14981	82.8	3e-14	87.5	168 bp (19.5%)	1
Description:	extensin class I (clone w1-8 L) - tomato (fragment)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.43685.2.S1_s_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.43685.2.S1_s_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.43685.2.S1_s_at:ProbePair9	PM	data not available	data not available	data not available
LesAffx.43685.2.S1_s_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.43685.2.S1_s_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.43685.2.S1_s_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.43685.2.S1_s_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.43685.2.S1_s_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.43685.2.S1_s_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.43685.2.S1_s_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.43685.2.S1_s_at:ProbePair7	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	189.33	189.33	47.63	0.25
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	10.04	6.98	6.82	0.68
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	548.42	570.29	65.51	0.12
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	865.93	865.93	871.45	1.01
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	621.81	695.27	356.15	0.57
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	96.76	90.72	19.12	0.20
	Gene expression data from Aft red fruit peel	exocarp	3	3	14.53	15.06	2.83	0.20
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	32.98	34.94	7.58	0.23
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	9.58	7.44	4.28	0.45
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	204.42	176.59	71.37	0.35
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	121.10	121.10	121.83	1.01
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	347.63	373.62	81.77	0.24
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	118.41	118.41	117.54	0.99
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	82.10	100.73	42.76	0.52
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1334.32	1334.32	715.05	0.54
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	318.48	318.48	142.67	0.45
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	76.16	77.70	23.79	0.31
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	35.43	37.22	16.92	0.48
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	94.69	95.38	8.09	0.09
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	63.79	66.05	13.81	0.22
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	84.66	87.17	9.43	0.11
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	1707.81	1748.24	183.37	0.11
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	547.37	547.37	509.19	0.93
	Gene expression data from Micro-Tom root	root	3	3	610.71	690.63	189.02	0.31

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	223.01	2e-4	P
	GSM480171 extract 1	155.65	0.002	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	6.98456	0.466	A
	GSM480217 extract 1	5.28483	0.534	A
	GSM480216 extract 1	17.8515	0.024	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	600.192	2e-4	P
	GSM480181 extract 1	570.29	2e-4	P
	GSM480182 extract 1	474.766	7e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1482.14	2e-4	P
	GSM480186 extract 1	249.727	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	771.443	2e-4	P
	GSM480226 extract 1	619.091	2e-4	P
	GSM480227 extract 1	131.618	0.003	P
	GSM480225 extract 1	965.101	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	118.169	7e-4	P
	GSM480207 extract 1	90.7157	7e-4	P
	GSM480208 extract 1	81.3844	0.002	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	17.0527	0.011	P
	GSM480209 extract 1	11.4629	0.150	A
	GSM480210 extract 1	15.0617	0.038	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	34.9368	0.112	A
	GSM480219 extract 1	39.3846	0.030	P
	GSM480218 extract 1	24.6107	0.056	M
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	14.5079	0.399	A
	GSM480223 extract 1	7.43761	0.171	A
	GSM480222 extract 1	6.80076	0.500	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	151.157	0.003	P
	GSM480191 extract 1	285.508	7e-4	P
	GSM480192 extract 1	176.591	0.001	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	34.9594	0.014	P
	GSM480195 extract 1	207.25	0.002	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	256.028	7e-4	P
	GSM480199 extract 1	373.615	2e-4	P
	GSM480198 extract 1	413.246	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	201.525	0.001	P
	GSM480194 extract 1	35.2959	0.006	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	18.2897	0.068	A
	GSM480228 extract 1	103.381	0.003	P
	GSM480229 extract 1	108.648	0.006	P
	GSM480230 extract 1	98.0826	0.002	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1839.94	2e-4	P
	GSM480169 extract 1	828.7	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	419.357	2e-4	P
	GSM480173 extract 1	217.598	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	77.6954	0.003	P
	GSM480176 extract 1	99.1412	0.003	P
	GSM480175 extract 1	51.6332	0.014	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	17.6825	0.112	A
	GSM480179 extract 1	51.3732	0.006	P
	GSM480178 extract 1	37.2209	0.019	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	86.2841	0.002	P
	GSM480200 extract 1	95.383	0.002	P
	GSM480202 extract 1	102.417	0.001	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	48.9847	0.008	P
	GSM480203 extract 1	66.0452	0.003	P
	GSM480205 extract 1	76.3265	0.003	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	92.5714	0.002	P
	GSM480214 extract 1	87.1704	7e-4	P
	GSM480213 extract 1	74.2241	0.008	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	1867.59	2e-4	P
	GSM480188 extract 1	1748.24	2e-4	P
	GSM480189 extract 1	1507.59	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	907.419	2e-4	P
	GSM480184 extract 1	187.317	7e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	746.638	2e-4	P
	GSM480165 extract 1	690.629	2e-4	P
	GSM480167 extract 1	394.86	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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