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Expression Template: Les.4371.1.A1_s_at

Template Basic Information

Template name:	Les.4371.1.A1_s_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581194
External db links:	GenBank: X72731.1

Annotations for unigene SGN-U581194 (manual: 2 | blast: 0 | go: 0 )

Manual annotations

Based on clone cLET-1-J1, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "tubulin, TUB8" Annotation Keywords: cell structure; cytoskeleton; tubulin; microtubule; microtubules

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4371.1.A1_s_at:ProbePair0	PM	data not available	data not available	data not available
Les.4371.1.A1_s_at:ProbePair1	PM	data not available	data not available	data not available
Les.4371.1.A1_s_at:ProbePair10	PM	data not available	data not available	data not available
Les.4371.1.A1_s_at:ProbePair2	PM	data not available	data not available	data not available
Les.4371.1.A1_s_at:ProbePair3	PM	data not available	data not available	data not available
Les.4371.1.A1_s_at:ProbePair4	PM	data not available	data not available	data not available
Les.4371.1.A1_s_at:ProbePair5	PM	data not available	data not available	data not available
Les.4371.1.A1_s_at:ProbePair6	PM	data not available	data not available	data not available
Les.4371.1.A1_s_at:ProbePair7	PM	data not available	data not available	data not available
Les.4371.1.A1_s_at:ProbePair8	PM	data not available	data not available	data not available
Les.4371.1.A1_s_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	368.84	368.84	198.23	0.54
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1071.35	1131.92	110.11	0.10
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	359.61	278.73	150.25	0.42
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	426.72	479.61	204.23	0.48
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	140.56	135.60	39.15	0.28
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	209.64	215.90	35.22	0.17
	Gene expression data from Aft red fruit peel	exocarp	3	3	193.74	171.02	68.58	0.35
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	380.11	359.51	56.44	0.15
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	356.72	361.79	15.83	0.04
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	389.74	396.01	49.96	0.13
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	682.30	682.30	270.62	0.40
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	235.93	250.18	96.62	0.41
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	547.41	547.41	495.04	0.90
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	477.88	369.78	282.15	0.59
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	573.49	573.49	11.99	0.02
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	450.94	450.94	9.02	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	479.26	615.54	271.20	0.57
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	148.86	145.09	12.12	0.08
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	345.63	304.87	117.42	0.34
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	583.38	436.10	323.67	0.55
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	544.77	544.77	403.24	0.74
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	194.96	194.14	19.88	0.10
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	239.22	239.22	59.61	0.25
	Gene expression data from Micro-Tom root	root	3	3	335.74	344.10	60.51	0.18

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	509.01	2e-4	P
	GSM480171 extract 1	228.665	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	1131.92	0.002	P
	GSM480202 extract 1	1137.88	2e-4	P
	GSM480201 extract 1	944.252	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	267.116	0.002	P
	GSM480215 extract 1	532.975	0.006	P
	GSM480217 extract 1	278.732	0.019	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	599.304	0.011	P
	GSM480181 extract 1	479.606	0.001	P
	GSM480182 extract 1	201.244	0.002	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	132.655	7e-4	P
	GSM480224 extract 1	138.537	2e-4	P
	GSM480226 extract 1	98.169	0.003	P
	GSM480227 extract 1	192.862	7e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	241.306	0.030	P
	GSM480206 extract 1	171.707	0.002	P
	GSM480208 extract 1	215.896	0.002	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	270.79	0.006	P
	GSM480209 extract 1	139.405	0.019	P
	GSM480211 extract 1	171.021	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	336.87	7e-4	P
	GSM480220 extract 1	443.956	7e-4	P
	GSM480218 extract 1	359.509	0.008	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	369.389	7e-4	P
	GSM480223 extract 1	338.971	0.002	P
	GSM480222 extract 1	361.794	0.002	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	396.006	0.001	P
	GSM480192 extract 1	336.949	7e-4	P
	GSM480191 extract 1	436.28	0.002	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	490.944	2e-4	P
	GSM480196 extract 1	873.658	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	250.179	0.004	P
	GSM480197 extract 1	324.643	7e-4	P
	GSM480199 extract 1	132.978	0.001	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	197.368	0.001	P
	GSM480194 extract 1	897.457	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	423.873	7e-4	P
	GSM480228 extract 1	280.834	0.014	P
	GSM480230 extract 1	315.677	0.004	P
	GSM480231 extract 1	891.133	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	581.973	2e-4	P
	GSM480168 extract 1	565.015	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	457.318	2e-4	P
	GSM480173 extract 1	444.563	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	655.292	2e-4	P
	GSM480175 extract 1	615.537	7e-4	P
	GSM480176 extract 1	166.939	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	145.09	7e-4	P
	GSM480177 extract 1	139.07	7e-4	P
	GSM480179 extract 1	162.423	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	304.87	0.003	P
	GSM480203 extract 1	477.998	0.006	P
	GSM480205 extract 1	254.018	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	359.539	2e-4	P
	GSM480214 extract 1	954.495	7e-4	P
	GSM480212 extract 1	436.097	7e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	259.638	0.001	P
	GSM480186 extract 1	829.908	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	215.243	7e-4	P
	GSM480188 extract 1	175.509	2e-4	P
	GSM480189 extract 1	194.143	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	281.369	0.004	P
	GSM480184 extract 1	197.074	0.006	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	271.482	0.002	P
	GSM480166 extract 1	391.637	7e-4	P
	GSM480167 extract 1	344.103	0.001	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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