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Expression Template: Les.3498.1.A1_at

Template Basic Information

Template name:	Les.3498.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U573232
External db links:	GenBank: AJ401079.2

Annotations for unigene SGN-U573232 (manual: 0 | blast: 3 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|146272052\|emb\|CAM97308.1\|	884		100	1308 bp (78.6%)	2
Description:	Rab-GDP
arabidopsis	blastx	At5G09550.1	761		82.8	1308 bp (78.6%)	2
Description:	RAB GDP-dissociation inhibitor \| chr5:2963851-2966466 FORWARD
swissprot	blastx	P21856	525	3e-148	58.56	1293 bp (77.7%)	2
Description:	Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1

GO Terms Annotations

GO:0015031protein transport
GO:0005093Rab GDP-dissociation inhibitor activity
GO:0043087regulation of GTPase activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3498.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3498.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3498.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3498.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3498.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3498.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3498.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3498.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3498.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3498.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3498.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	5.65	5.65	4.76	0.84
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	4.34	3.20	4.30	0.99
	Gene expression data from Aft red fruit flesh	endocarp	3	3	5.11	5.56	4.41	0.86
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	8.63	8.78	1.58	0.18
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	5.09	4.99	2.14	0.42
	Gene expression data from Aft red fruit peel	exocarp	3	3	6.08	7.32	2.28	0.38
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	7.76	5.87	3.35	0.43
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	4.42	4.89	1.40	0.32
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	5.51	5.77	1.16	0.21
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	12.04	12.04	0.30	0.02
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	7.62	6.34	3.29	0.43
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	6.98	6.98	1.83	0.26
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	10.83	9.73	3.66	0.34
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	7.63	7.63	4.33	0.57
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	4.68	4.68	5.65	1.21
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	15.29	12.26	9.34	0.61
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	8.19	7.14	2.05	0.25
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	7.01	7.49	2.44	0.35
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	8.70	8.80	1.97	0.23
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	6.78	7.29	1.86	0.27
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	12.45	12.45	5.34	0.43
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	7.49	7.51	2.27	0.30
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	4.82	4.82	5.10	1.06
	Gene expression data from Micro-Tom root	root	3	3	5.39	6.56	3.95	0.73

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	9.01786	0.081	A
	GSM480170 extract 1	2.28181	0.366	A
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	3.19548	0.334	A
	GSM480200 extract 1	0.735952	0.954	A
	GSM480202 extract 1	9.10042	0.003	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	0.481027	0.601	A
	GSM480204 extract 1	9.27432	0.008	P
	GSM480205 extract 1	5.56018	0.171	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	9.55689	0.038	P
	GSM480225 extract 1	7.99939	0.195	A
	GSM480226 extract 1	10.2295	0.366	A
	GSM480227 extract 1	6.7209	0.046	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	7.2802	0.130	A
	GSM480208 extract 1	4.98513	0.432	A
	GSM480206 extract 1	2.99836	0.568	A
Gene expression data from Aft red fruit peel	GSM480209 extract 1	7.46437	0.195	A
	GSM480210 extract 1	3.44545	0.150	A
	GSM480211 extract 1	7.32215	0.081	A
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	11.6347	0.056	M
	GSM480218 extract 1	5.78591	0.046	P
	GSM480219 extract 1	5.87262	0.046	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	2.84156	0.304	A
	GSM480222 extract 1	5.52035	0.171	A
	GSM480223 extract 1	4.89033	0.466	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	4.24296	0.432	A
	GSM480190 extract 1	6.53106	0.112	A
	GSM480191 extract 1	5.76778	0.125	A
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	11.8249	0.003	P
	GSM480195 extract 1	12.2456	0.014	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	5.16731	0.171	A
	GSM480198 extract 1	11.3607	0.004	P
	GSM480199 extract 1	6.34314	0.130	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	8.27329	0.030	P
	GSM480194 extract 1	5.68598	0.130	A
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	15.8786	0.008	P
	GSM480228 extract 1	11.1575	0.068	A
	GSM480231 extract 1	8.30991	0.024	P
	GSM480230 extract 1	7.97166	0.274	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	4.56284	0.046	P
	GSM480169 extract 1	10.6879	0.056	M
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	8.6713	0.095	A
	GSM480173 extract 1	0.683299	0.366	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	25.7657	0.011	P
	GSM480176 extract 1	12.2611	0.014	P
	GSM480174 extract 1	7.83168	0.246	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	6.86839	0.095	A
	GSM480178 extract 1	10.5554	0.130	A
	GSM480179 extract 1	7.14474	0.081	A
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	4.37279	0.195	A
	GSM480212 extract 1	9.18267	0.068	A
	GSM480213 extract 1	7.48748	0.130	A
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	10.6113	0.046	P
	GSM480215 extract 1	8.79793	0.056	M
	GSM480216 extract 1	6.68357	0.366	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	7.28564	0.091	A
	GSM480180 extract 1	4.71314	0.399	A
	GSM480181 extract 1	8.33114	0.112	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	16.2226	0.130	A
	GSM480186 extract 1	8.67733	0.004	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	7.5065	0.150	A
	GSM480187 extract 1	9.76316	0.274	A
	GSM480188 extract 1	5.21356	0.030	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1.20681	0.601	A
	GSM480184 extract 1	8.42371	0.024	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	6.555	0.095	A
	GSM480166 extract 1	0.992689	0.696	A
	GSM480167 extract 1	8.63678	0.038	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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