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Expression Template: Les.372.1.A1_at

Template Basic Information

Template name:	Les.372.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U582560
External db links:	GenBank: BI931907

Annotations for unigene SGN-U582560 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEM-6-E5, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: kinase Annotation Keywords: signal transduction; kinase; phosphorylation

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|157356623\|emb\|CAO62818.1\|	813	85.43	1377 bp (85.1%)	3
Description:	unnamed
arabidopsis	blastx	At5G41260.1	739	77.61	1377 bp (85.1%)	3
Description:	protein kinase family protein \| chr5:16521225-16524198 FORWARD
swissprot	blastx	Q9FHD7	739	77.61	1377 bp (85.1%)	3
Description:	Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.372.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.372.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.372.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.372.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.372.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.372.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.372.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.372.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.372.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.372.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.372.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	32.07	32.07	30.34	0.95
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	32.62	32.47	1.48	0.05
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	32.89	32.70	2.06	0.06
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	40.54	23.45	33.75	0.83
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	39.09	39.09	29.52	0.76
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	25.79	20.06	15.70	0.61
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	20.84	20.84	3.89	0.19
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	25.59	26.26	7.02	0.27
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	38.54	39.25	3.27	0.08
	Gene expression data from Aft red fruit peel	exocarp	3	3	17.58	20.17	8.28	0.47
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	43.29	43.32	16.77	0.39
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	20.63	20.18	3.97	0.19
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	41.28	40.38	14.69	0.36
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	19.45	19.45	12.85	0.66
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	33.33	25.28	20.94	0.63
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	15.55	15.55	0.71	0.05
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	22.18	19.61	8.62	0.39
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	30.10	30.10	16.62	0.55
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	12.37	12.37	0.24	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	11.19	10.64	5.39	0.48
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	13.62	14.82	3.35	0.25
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	44.43	45.10	3.09	0.07
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	19.14	18.55	4.58	0.24
	Gene expression data from Micro-Tom root	root	3	3	26.32	25.88	2.45	0.09

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	53.5292	0.019	P
	GSM480171 extract 1	10.6188	0.150	A
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	34.1699	0.030	P
	GSM480212 extract 1	32.4667	0.046	P
	GSM480214 extract 1	31.2297	0.006	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	32.7	0.011	P
	GSM480215 extract 1	30.9349	0.008	P
	GSM480217 extract 1	35.0323	0.011	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	79.4186	0.001	P
	GSM480181 extract 1	18.7605	0.024	P
	GSM480182 extract 1	23.4546	0.046	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	59.9584	0.006	P
	GSM480186 extract 1	18.2118	0.008	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	20.0582	0.006	P
	GSM480187 extract 1	43.5577	0.008	P
	GSM480188 extract 1	13.7593	0.006	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	18.0851	0.024	P
	GSM480183 extract 1	23.5886	0.014	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	22.9439	0.014	P
	GSM480226 extract 1	29.5794	0.014	P
	GSM480225 extract 1	32.7903	0.056	M
	GSM480227 extract 1	17.0431	0.038	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	34.979	0.008	P
	GSM480206 extract 1	39.2477	0.006	P
	GSM480207 extract 1	41.405	0.018	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	8.30343	0.068	A
	GSM480210 extract 1	24.2504	0.014	P
	GSM480211 extract 1	20.1714	0.006	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	26.5167	0.019	P
	GSM480218 extract 1	43.3158	0.011	P
	GSM480220 extract 1	60.051	0.011	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	16.9023	0.095	A
	GSM480223 extract 1	20.1775	0.024	P
	GSM480221 extract 1	24.7958	0.024	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	56.4024	0.011	P
	GSM480191 extract 1	40.3781	0.006	P
	GSM480192 extract 1	27.0595	0.024	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	28.535	0.019	P
	GSM480196 extract 1	10.3613	0.095	A
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	25.284	0.014	P
	GSM480197 extract 1	57.1038	0.002	P
	GSM480198 extract 1	17.6091	0.038	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	16.0509	0.038	P
	GSM480194 extract 1	15.05	0.019	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	34.3722	0.002	P
	GSM480228 extract 1	17.242	0.019	P
	GSM480229 extract 1	21.981	0.038	P
	GSM480231 extract 1	15.1287	0.095	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	41.8524	0.002	P
	GSM480169 extract 1	18.3542	0.030	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	12.1974	0.024	P
	GSM480173 extract 1	12.5331	0.068	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	16.8469	0.030	P
	GSM480174 extract 1	10.636	0.150	A
	GSM480175 extract 1	6.10144	0.432	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	9.83881	0.112	A
	GSM480179 extract 1	14.8184	0.019	P
	GSM480178 extract 1	16.2088	0.024	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	45.1002	0.019	P
	GSM480200 extract 1	47.1382	0.019	P
	GSM480202 extract 1	41.0614	0.006	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	18.5527	0.019	P
	GSM480204 extract 1	23.9857	0.038	P
	GSM480205 extract 1	14.8794	0.095	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	24.1165	0.019	P
	GSM480166 extract 1	28.957	0.014	P
	GSM480167 extract 1	25.8791	0.019	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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