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Expression Template: Les.4028.1.A1_at

Template Basic Information

Template name:	Les.4028.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581786
External db links:	GenBank: BE354143

Annotations for unigene SGN-U581786 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|110739127\|dbj\|BAF01480.1\|	525	3e-147	72.47	1146 bp (99.4%)	3
Description:	hypothetical protein [Arabidopsis thaliana]
arabidopsis	blastx	At4G38600.1	525	2e-149	72.47	1146 bp (99.4%)	3
Description:	Symbols: UPL3, KAK \| KAK (KAKTUS) \| chr4:18041497-18049286 REVERSE
swissprot	blastx	Q6WWW4	525	2e-148	72.47	1146 bp (99.4%)	3
Description:	E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4028.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4028.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4028.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4028.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4028.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4028.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4028.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4028.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4028.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4028.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4028.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	0.42	0.42	0.05	0.13
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	0.36	0.27	0.21	0.58
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	2.51	0.99	3.24	1.29
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	2.67	1.91	2.57	0.96
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	0.46	0.46	0.47	1.03
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	0.32	0.20	0.23	0.72
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1.31	1.31	0.81	0.62
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1.03	0.73	0.96	0.93
	Gene expression data from Aft red fruit peel	exocarp	3	3	0.18	0.17	0.11	0.62
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	0.53	0.39	0.45	0.86
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	5.92	5.59	5.04	0.85
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	0.27	0.24	0.12	0.44
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	5.68	5.68	0.14	0.03
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	0.18	0.18	0.05	0.29
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	3.19	3.19	1.86	0.58
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1.57	0.50	2.31	1.47
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	0.35	0.35	0.17	0.48
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1.53	1.53	0.82	0.54
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1.76	0.85	2.23	1.27
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	0.31	0.28	0.08	0.26
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1.72	0.88	2.12	1.23
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	0.29	0.33	0.11	0.39
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1.44	0.52	2.04	1.42
	Gene expression data from Micro-Tom root	root	3	3	2.09	1.29	1.59	0.76

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	0.38288	0.829	A
	GSM480171 extract 1	0.457715	0.888	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	0.608684	0.601	A
	GSM480213 extract 1	0.21546	0.976	A
	GSM480214 extract 1	0.270452	0.905	A
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	0.304016	0.970	A
	GSM480216 extract 1	0.987062	0.781	A
	GSM480217 extract 1	6.22883	0.366	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1.90509	0.601	A
	GSM480181 extract 1	0.570727	0.962	A
	GSM480182 extract 1	5.52858	0.219	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	0.791668	0.888	A
	GSM480186 extract 1	0.123226	0.976	A
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	0.164863	0.986	A
	GSM480188 extract 1	0.20437	0.781	A
	GSM480187 extract 1	0.580178	0.944	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	1.88166	0.358	A
	GSM480183 extract 1	0.731918	0.601	A
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	0.257864	0.970	A
	GSM480206 extract 1	2.10831	0.568	A
	GSM480208 extract 1	0.726156	0.726	A
Gene expression data from Aft red fruit peel	GSM480209 extract 1	0.290384	0.930	A
	GSM480210 extract 1	0.16814	0.805	A
	GSM480211 extract 1	0.0713011	0.981	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	0.157895	0.829	A
	GSM480219 extract 1	0.38945	0.666	A
	GSM480220 extract 1	1.03123	0.601	A
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1.06252	0.754	A
	GSM480222 extract 1	5.59195	0.112	A
	GSM480223 extract 1	11.1197	0.150	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	0.396948	0.696	A
	GSM480190 extract 1	0.235707	0.754	A
	GSM480192 extract 1	0.170626	0.866	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	5.57625	0.399	A
	GSM480196 extract 1	5.77955	0.038	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	0.179248	1.000	A
	GSM480197 extract 1	0.123896	0.981	A
	GSM480199 extract 1	0.225244	0.805	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1.87743	0.726	A
	GSM480194 extract 1	4.51148	0.095	A
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	5.0353	0.399	A
	GSM480229 extract 1	0.379302	0.976	A
	GSM480231 extract 1	0.629315	0.884	A
	GSM480230 extract 1	0.251103	0.944	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	0.471773	0.829	A
	GSM480169 extract 1	0.233908	0.970	A
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	2.1151	0.432	A
	GSM480173 extract 1	0.951848	0.805	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	0.849192	0.634	A
	GSM480174 extract 1	4.30738	0.399	A
	GSM480176 extract 1	0.126275	0.997	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	0.251534	0.976	A
	GSM480178 extract 1	0.283282	0.919	A
	GSM480179 extract 1	0.407788	0.870	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	0.875475	0.850	A
	GSM480201 extract 1	4.1309	0.274	A
	GSM480202 extract 1	0.146917	0.696	A
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	0.383984	0.799	A
	GSM480203 extract 1	0.165919	0.944	A
	GSM480205 extract 1	0.325703	0.781	A
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	0.249275	1.000	A
	GSM480224 extract 1	0.740275	0.870	A
	GSM480227 extract 1	4.49205	0.304	A
	GSM480226 extract 1	0.294245	0.954	A
Gene expression data from Micro-Tom root	GSM480167 extract 1	1.28606	0.781	A
	GSM480166 extract 1	3.92121	0.466	A
	GSM480165 extract 1	1.06185	0.726	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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