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Expression Template: Les.4030.1.A1_at

Template Basic Information

Template name:	Les.4030.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U569495
External db links:	GenBank: AW441851

Annotations for unigene SGN-U569495 (manual: 1 | blast: 3 | go: 2 )

Manual annotations

Based on clone cLEN-22-J5, annotated by Rob Alba

Created 2003-01-20, last modified 2003-01-20

Putative Homology: glutamate dehydrogenase
Annotation Keywords: amino acid metabolism; amino acid biosynthesis; glutamate biosynthesis; proline biosynthesis; glutamine biosynthesis; histidine biosynthesis; arginine synthisis; nitrogen transport; nitrogen cycling; nitrogen assimilation; nucleic acid biosynthesis; nucleotide biosynthesis; pyrimidine biosynthesis; purine biosynthesis; polyamine biosynthesis

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|108861502\|gb\|ABG21698.1\|	362	2e-114	83.33	612 bp (72.9%)	2
Description:	putative
arabidopsis	blastx	At1G51720.1	357	1e-111	81.86	612 bp (72.9%)	2
Description:	glutamate dehydrogenase, putative \| chr1:19185409-19189965 FORWARD
swissprot	blastx	P28724	223	2e-63	54.97	573 bp (68.2%)	2
Description:	NADP-specific glutamate dehydrogenase OS=Giardia lamblia PE=2 SV=1

GO Terms Annotations

GO:0006520amino acid metabolism
GO:0016491oxidoreductase activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4030.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4030.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4030.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4030.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4030.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4030.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4030.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4030.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4030.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4030.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4030.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	10.83	10.83	0.42	0.04
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	12.94	14.34	6.56	0.51
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	12.11	12.11	0.27	0.02
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	7.85	5.81	4.18	0.53
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	9.84	9.84	2.64	0.27
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	9.68	9.54	3.83	0.40
	Gene expression data from Aft red fruit peel	exocarp	3	3	3.66	3.43	3.55	0.97
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	7.26	7.30	2.47	0.34
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	10.01	9.17	2.86	0.29
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	5.14	3.56	2.73	0.53
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	7.50	7.50	2.36	0.31
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	7.77	8.13	2.77	0.36
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	4.72	4.72	3.60	0.76
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	8.77	8.87	3.60	0.41
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	8.57	8.57	2.56	0.30
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	5.10	5.10	1.75	0.34
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	8.45	9.55	4.02	0.48
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	10.40	10.00	0.74	0.07
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	9.71	10.60	2.68	0.28
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	11.62	10.13	3.23	0.28
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	11.58	11.34	3.91	0.34
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	11.64	12.57	2.29	0.20
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	11.56	11.83	2.12	0.18
	Gene expression data from Micro-Tom root	root	3	3	5.96	6.39	4.99	0.84

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	11.1271	7e-4	P
	GSM480171 extract 1	10.5393	0.006	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	18.6953	0.003	P
	GSM480201 extract 1	5.79438	0.246	A
	GSM480202 extract 1	14.3374	0.011	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	11.9177	0.112	A
	GSM480186 extract 1	12.3021	0.001	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	5.80948	0.171	A
	GSM480187 extract 1	5.0761	0.366	A
	GSM480189 extract 1	12.6562	0.056	M
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	7.9752	0.006	P
	GSM480184 extract 1	11.7075	0.011	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	13.5782	0.008	P
	GSM480206 extract 1	5.92075	0.130	A
	GSM480208 extract 1	9.53751	0.056	M
Gene expression data from Aft red fruit peel	GSM480209 extract 1	3.42752	0.239	A
	GSM480210 extract 1	7.3161	0.095	A
	GSM480211 extract 1	0.231688	0.601	A
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	4.76108	0.150	A
	GSM480218 extract 1	9.70775	0.046	P
	GSM480220 extract 1	7.30358	0.219	A
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	7.66555	0.171	A
	GSM480221 extract 1	9.17293	0.399	A
	GSM480222 extract 1	13.2002	0.006	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	3.56088	0.246	A
	GSM480190 extract 1	3.56235	0.500	A
	GSM480192 extract 1	8.28365	0.046	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	9.16199	0.046	P
	GSM480196 extract 1	5.83038	0.246	A
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	8.12585	0.056	M
	GSM480197 extract 1	10.3457	0.068	A
	GSM480198 extract 1	4.84235	0.195	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	7.26931	0.054	M
	GSM480194 extract 1	2.17506	0.466	A
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	12.3079	0.150	A
	GSM480228 extract 1	6.36551	0.246	A
	GSM480231 extract 1	11.3724	0.056	M
	GSM480230 extract 1	5.04644	0.246	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	6.75669	0.112	A
	GSM480168 extract 1	10.384	0.002	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	6.33261	0.046	P
	GSM480172 extract 1	3.8647	0.274	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	11.7993	0.056	M
	GSM480174 extract 1	3.99431	0.304	A
	GSM480176 extract 1	9.55295	0.068	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	9.9456	0.030	P
	GSM480179 extract 1	9.99895	0.081	A
	GSM480178 extract 1	11.2561	0.030	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	10.5974	0.046	P
	GSM480203 extract 1	6.70002	0.095	A
	GSM480205 extract 1	11.8319	0.068	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	10.1311	0.112	A
	GSM480213 extract 1	9.41147	0.046	P
	GSM480214 extract 1	15.323	0.006	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	15.6097	0.024	P
	GSM480217 extract 1	11.3392	0.130	A
	GSM480216 extract 1	7.79258	0.150	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	9.02604	0.130	A
	GSM480180 extract 1	12.5726	0.014	P
	GSM480181 extract 1	13.3166	0.046	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	10.7064	0.130	A
	GSM480225 extract 1	13.6053	0.219	A
	GSM480226 extract 1	8.98185	0.130	A
	GSM480227 extract 1	12.9537	0.046	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	0.763809	0.399	A
	GSM480165 extract 1	10.7228	0.014	P
	GSM480166 extract 1	6.38574	0.195	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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