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Expression Template: Les.4027.1.A1_at

Template Basic Information

Template name:	Les.4027.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U571197
External db links:	GenBank: BI927766

Annotations for unigene SGN-U571197 (manual: 2 | blast: 2 | go: 0 )

Manual annotations

Based on clone cLEG-26-B1, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: GTP-binding protein Annotation Keywords: signal transduction; GTP mediated signal cascade

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157350049\|emb\|CAO39987.1\|	556	2e-156	72.18	1242 bp (64.3%)	1
Description:	unnamed
arabidopsis	blastx	At4G02510.1	537	8e-153	70	1242 bp (64.3%)	1
Description:	Symbols: TOC86, PPI2, TOC160, ATTOC159, TOC159 \| TOC159 (translocon outer membrane complex 159&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4027.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4027.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4027.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4027.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4027.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4027.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4027.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4027.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4027.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4027.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4027.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1075.07	1075.07	179.08	0.17
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	672.14	698.50	65.19	0.10
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	921.96	895.94	79.32	0.09
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	639.04	639.04	129.60	0.20
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1206.06	1342.60	335.62	0.28
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	973.47	972.75	25.99	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	536.40	514.84	39.59	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	944.36	907.93	64.49	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	607.45	619.74	23.45	0.04
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	675.47	691.97	55.18	0.08
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	499.27	499.27	42.44	0.09
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	490.83	517.25	82.52	0.17
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	548.55	548.55	186.10	0.34
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	812.49	858.87	173.93	0.21
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	741.78	741.78	25.35	0.03
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1621.85	1621.85	2.41	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1430.99	1489.25	175.67	0.12
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1227.50	1274.64	219.89	0.18
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	587.15	580.78	15.75	0.03
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	455.42	450.54	19.11	0.04
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	746.17	715.21	275.13	0.37
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	502.52	495.84	47.87	0.10
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	606.05	606.05	37.73	0.06
	Gene expression data from Micro-Tom root	root	3	3	327.88	313.06	37.16	0.11

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	1201.7	2e-4	P
	GSM480171 extract 1	948.448	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	698.496	2e-4	P
	GSM480202 extract 1	720.02	2e-4	P
	GSM480200 extract 1	597.896	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	895.944	2e-4	P
	GSM480213 extract 1	858.923	2e-4	P
	GSM480214 extract 1	1011.02	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	547.407	2e-4	P
	GSM480185 extract 1	730.684	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	1380.08	2e-4	P
	GSM480224 extract 1	1430.45	2e-4	P
	GSM480226 extract 1	1305.13	2e-4	P
	GSM480227 extract 1	708.59	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	972.747	2e-4	P
	GSM480206 extract 1	999.822	2e-4	P
	GSM480208 extract 1	947.848	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	512.276	2e-4	P
	GSM480210 extract 1	582.094	2e-4	P
	GSM480211 extract 1	514.839	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	907.931	2e-4	P
	GSM480219 extract 1	1018.83	2e-4	P
	GSM480220 extract 1	906.334	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	622.199	2e-4	P
	GSM480221 extract 1	580.408	2e-4	P
	GSM480223 extract 1	619.741	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	720.525	2e-4	P
	GSM480190 extract 1	691.966	2e-4	P
	GSM480191 extract 1	613.932	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	469.261	2e-4	P
	GSM480196 extract 1	529.286	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	398.338	2e-4	P
	GSM480197 extract 1	556.898	2e-4	P
	GSM480199 extract 1	517.254	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	416.959	2e-4	P
	GSM480194 extract 1	680.144	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	966.28	2e-4	P
	GSM480228 extract 1	827.145	2e-4	P
	GSM480231 extract 1	565.947	2e-4	P
	GSM480230 extract 1	890.599	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	723.857	2e-4	P
	GSM480168 extract 1	759.708	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1623.56	2e-4	P
	GSM480173 extract 1	1620.15	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	1489.25	2e-4	P
	GSM480175 extract 1	1570.13	2e-4	P
	GSM480176 extract 1	1233.59	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	987.869	2e-4	P
	GSM480178 extract 1	1274.64	2e-4	P
	GSM480179 extract 1	1420	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	575.588	2e-4	P
	GSM480204 extract 1	605.092	2e-4	P
	GSM480205 extract 1	580.779	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	450.535	2e-4	P
	GSM480216 extract 1	476.501	2e-4	P
	GSM480217 extract 1	439.232	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1035.47	2e-4	P
	GSM480181 extract 1	487.826	2e-4	P
	GSM480182 extract 1	715.206	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	553.38	2e-4	P
	GSM480187 extract 1	458.344	2e-4	P
	GSM480189 extract 1	495.842	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	579.368	2e-4	P
	GSM480183 extract 1	632.726	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	313.063	2e-4	P
	GSM480166 extract 1	300.418	2e-4	P
	GSM480167 extract 1	370.173	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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