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Expression Template: Les.5167.1.A1_at

Template Basic Information

Template name:	Les.5167.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U573786
External db links:	GenBank: BT013420.1

Annotations for unigene SGN-U573786 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157344208\|emb\|CAO69141.1\|	413		70.18	975 bp (48.2%)	1
Description:	unnamed
arabidopsis	blastx	At3G55580.1	355	1e-176	63.58	936 bp (46.2%)	1
Description:	regulator of chromosome condensation (RCC1) family protein \| chr3:20623745-20626709 FORWARD
swissprot	blastx	Q4R828	115	7e-25	35.19	525 bp (25.9%)	2
Description:	RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5167.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.5167.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.5167.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.5167.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.5167.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.5167.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.5167.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.5167.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.5167.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.5167.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.5167.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	6.54	6.54	1.90	0.29
	Gene expression data from Aft red fruit flesh	endocarp	3	3	6.87	6.30	2.85	0.41
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	7.41	7.67	3.10	0.42
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	4.04	4.04	5.11	1.27
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	5.33	4.63	4.36	0.82
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	0.98	0.98	0.09	0.10
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	7.10	5.55	3.39	0.48
	Gene expression data from Aft red fruit peel	exocarp	3	3	4.73	4.80	1.15	0.24
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	4.08	4.53	2.89	0.71
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	6.89	5.99	5.94	0.86
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	3.44	3.66	3.05	0.89
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	7.18	7.18	0.18	0.03
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	5.59	4.59	4.76	0.85
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2.49	2.49	3.15	1.27
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	8.12	4.31	10.44	1.29
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1.19	1.19	0.24	0.20
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2.20	2.20	0.01	0.01
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	7.21	7.57	0.90	0.12
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	7.82	9.32	2.70	0.35
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	6.02	7.94	4.72	0.78
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	2.53	2.04	2.16	0.86
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	6.57	6.88	0.89	0.13
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	7.43	5.01	5.72	0.77
	Gene expression data from Micro-Tom root	root	3	3	3.68	2.84	2.80	0.76

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	5.20169	0.399	A
	GSM480170 extract 1	7.88635	0.024	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	9.95842	0.274	A
	GSM480203 extract 1	6.30121	0.366	A
	GSM480205 extract 1	4.34864	0.432	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	7.66856	0.304	A
	GSM480213 extract 1	10.3676	0.130	A
	GSM480214 extract 1	4.18474	0.399	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	7.64714	0.171	A
	GSM480186 extract 1	0.424616	0.432	A
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	4.63104	0.304	A
	GSM480187 extract 1	1.35453	0.666	A
	GSM480189 extract 1	9.99666	0.304	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	0.913525	0.829	A
	GSM480184 extract 1	1.0477	0.696	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	5.54829	0.246	A
	GSM480208 extract 1	10.9913	0.219	A
	GSM480207 extract 1	4.75603	0.719	A
Gene expression data from Aft red fruit peel	GSM480210 extract 1	4.80201	0.274	A
	GSM480209 extract 1	3.54304	0.399	A
	GSM480211 extract 1	5.8318	0.246	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	0.996433	0.666	A
	GSM480219 extract 1	4.5292	0.399	A
	GSM480220 extract 1	6.72089	0.399	A
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	5.98641	0.334	A
	GSM480223 extract 1	1.45693	0.399	A
	GSM480222 extract 1	13.2382	0.014	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	6.37201	0.274	A
	GSM480190 extract 1	3.66424	0.601	A
	GSM480191 extract 1	0.287041	0.781	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	7.30596	0.081	A
	GSM480196 extract 1	7.05111	0.366	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	10.7699	0.030	P
	GSM480198 extract 1	1.42054	0.534	A
	GSM480199 extract 1	4.5868	0.399	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	0.25772	0.466	A
	GSM480193 extract 1	4.71696	0.304	A
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	23.5002	0.092	A
	GSM480228 extract 1	3.58884	0.246	A
	GSM480231 extract 1	0.355342	0.534	A
	GSM480230 extract 1	5.02664	0.195	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1.36585	0.568	A
	GSM480169 extract 1	1.02239	0.601	A
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	2.20781	0.534	A
	GSM480173 extract 1	2.19221	0.754	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	7.87835	0.334	A
	GSM480175 extract 1	6.18981	0.359	A
	GSM480176 extract 1	7.56742	0.213	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	4.70194	0.219	A
	GSM480179 extract 1	9.31872	0.246	A
	GSM480178 extract 1	9.43055	0.150	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	9.47236	0.219	A
	GSM480201 extract 1	7.93612	0.171	A
	GSM480202 extract 1	0.645102	0.726	A
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	0.645393	0.658	A
	GSM480216 extract 1	2.04249	0.601	A
	GSM480215 extract 1	4.89003	0.432	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	7.26644	0.466	A
	GSM480180 extract 1	5.57468	0.366	A
	GSM480181 extract 1	6.87568	0.466	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	5.89816	0.274	A
	GSM480226 extract 1	3.79654	0.500	A
	GSM480227 extract 1	4.1154	0.334	A
	GSM480225 extract 1	15.9022	0.068	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	1.39892	0.781	A
	GSM480166 extract 1	2.83564	0.304	A
	GSM480167 extract 1	6.80961	0.696	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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