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Expression Template: Les.325.3.A1_a_at

Template Basic Information

Template name:	Les.325.3.A1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	GenBank: BG626209

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.325.3.A1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.325.3.A1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.325.3.A1_a_at:ProbePair10	PM	data not available	data not available	data not available
Les.325.3.A1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.325.3.A1_a_at:ProbePair3	PM	data not available	data not available	data not available
Les.325.3.A1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.325.3.A1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.325.3.A1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.325.3.A1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.325.3.A1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.325.3.A1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2571.51	2571.51	207.40	0.08
	Gene expression data from Aft red fruit flesh	endocarp	3	3	220.81	224.55	7.49	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	291.74	314.63	78.26	0.27
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	47.38	49.39	9.11	0.19
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	620.96	696.46	277.60	0.45
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1279.38	1356.51	176.92	0.14
	Gene expression data from Aft red fruit peel	exocarp	3	3	421.97	433.98	25.93	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1807.67	1735.26	134.55	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	797.85	765.02	113.46	0.14
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	207.50	185.24	88.45	0.43
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	166.63	166.63	14.66	0.09
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	79.86	80.38	10.27	0.13
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	173.96	173.96	38.63	0.22
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	929.06	1055.31	387.73	0.42
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	669.09	669.09	4.68	0.01
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2169.75	2169.75	40.43	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	2118.97	2151.70	285.96	0.13
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2120.98	2033.09	214.32	0.10
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	531.80	512.51	64.74	0.12
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1816.17	1891.24	152.88	0.08
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	398.52	413.48	26.76	0.07
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	119.33	119.33	37.25	0.31
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	154.84	154.84	20.04	0.13
	Gene expression data from Micro-Tom root	root	3	3	48.45	47.31	13.54	0.28

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	2718.17	2e-4	P
	GSM480171 extract 1	2424.86	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	212.186	2e-4	P
	GSM480204 extract 1	225.693	2e-4	P
	GSM480203 extract 1	224.551	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	314.631	2e-4	P
	GSM480182 extract 1	356.001	2e-4	P
	GSM480181 extract 1	204.591	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	37.4334	2e-4	P
	GSM480187 extract 1	49.3891	2e-4	P
	GSM480189 extract 1	55.3228	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	703.224	2e-4	P
	GSM480224 extract 1	689.701	2e-4	P
	GSM480225 extract 1	868.176	2e-4	P
	GSM480227 extract 1	222.736	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	1404.63	2e-4	P
	GSM480206 extract 1	1076.99	2e-4	P
	GSM480207 extract 1	1356.51	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	433.979	2e-4	P
	GSM480209 extract 1	439.727	2e-4	P
	GSM480211 extract 1	392.216	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	1735.26	2e-4	P
	GSM480218 extract 1	1962.92	2e-4	P
	GSM480219 extract 1	1724.84	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	704.415	2e-4	P
	GSM480222 extract 1	924.104	2e-4	P
	GSM480223 extract 1	765.022	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	185.239	2e-4	P
	GSM480190 extract 1	132.305	2e-4	P
	GSM480192 extract 1	304.95	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	176.995	2e-4	P
	GSM480195 extract 1	156.257	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	69.3314	2e-4	P
	GSM480197 extract 1	89.8581	2e-4	P
	GSM480198 extract 1	80.3845	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	146.642	2e-4	P
	GSM480194 extract 1	201.28	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	1222.48	2e-4	P
	GSM480231 extract 1	383.126	2e-4	P
	GSM480228 extract 1	923.064	2e-4	P
	GSM480230 extract 1	1187.55	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	665.781	2e-4	P
	GSM480168 extract 1	672.393	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	2141.16	2e-4	P
	GSM480173 extract 1	2198.34	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	2387.16	2e-4	P
	GSM480174 extract 1	2151.7	2e-4	P
	GSM480176 extract 1	1818.06	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	1964.58	2e-4	P
	GSM480177 extract 1	2365.27	2e-4	P
	GSM480179 extract 1	2033.09	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	603.99	2e-4	P
	GSM480202 extract 1	478.904	2e-4	P
	GSM480201 extract 1	512.508	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1640.26	2e-4	P
	GSM480213 extract 1	1917	2e-4	P
	GSM480214 extract 1	1891.24	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	367.625	2e-4	P
	GSM480215 extract 1	413.485	2e-4	P
	GSM480216 extract 1	414.46	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	145.673	2e-4	P
	GSM480186 extract 1	92.9918	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	140.666	2e-4	P
	GSM480184 extract 1	169.01	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	47.3056	2e-4	P
	GSM480166 extract 1	35.5255	2e-4	P
	GSM480165 extract 1	62.5281	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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