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Expression Template: Les.5882.1.A1_at

Template Basic Information

Template name:	Les.5882.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U573699 SGN-U573699
External db links:	GenBank: AW218194

Annotations for unigene SGN-U573699 (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157331155\|emb\|CAO63275.1\|	117	2e-24	37.14	603 bp (57.6%)	-2
Description:	unnamed
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Annotations for unigene SGN-U573699 (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157331155\|emb\|CAO63275.1\|	117	2e-24	37.14	603 bp (57.6%)	-2
Description:	unnamed
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5882.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.5882.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.5882.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.5882.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.5882.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.5882.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.5882.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.5882.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.5882.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.5882.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.5882.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	331.01	331.01	272.43	0.82
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	326.76	337.20	18.36	0.06
	Gene expression data from Aft red fruit flesh	endocarp	3	3	200.06	173.40	61.35	0.31
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	151.28	146.48	17.03	0.11
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	494.72	508.60	46.03	0.09
	Gene expression data from Aft red fruit peel	exocarp	3	3	111.01	107.32	10.13	0.09
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	208.66	212.80	23.90	0.11
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	169.04	159.09	19.97	0.12
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	292.73	300.48	111.14	0.38
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	280.88	280.88	70.50	0.25
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	618.06	554.24	187.64	0.30
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	353.62	353.62	185.12	0.52
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	444.68	491.33	151.54	0.34
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	379.55	379.55	254.31	0.67
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	880.34	880.34	107.10	0.12
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	145.36	134.23	26.42	0.18
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	130.27	127.08	14.55	0.11
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	150.50	148.35	13.98	0.09
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	311.94	320.92	58.14	0.19
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	210.98	210.98	73.07	0.35
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	721.29	697.42	96.88	0.13
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	299.85	299.85	220.97	0.74
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	453.09	462.24	186.10	0.41
	Gene expression data from Micro-Tom root	root	3	3	209.20	203.78	23.05	0.11

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	523.643	2e-4	P
	GSM480171 extract 1	138.37	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	337.204	2e-4	P
	GSM480200 extract 1	305.565	2e-4	P
	GSM480202 extract 1	337.527	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	173.401	2e-4	P
	GSM480203 extract 1	270.232	2e-4	P
	GSM480205 extract 1	156.559	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	146.476	2e-4	P
	GSM480213 extract 1	137.158	2e-4	P
	GSM480214 extract 1	170.192	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	443.343	2e-4	P
	GSM480206 extract 1	508.604	2e-4	P
	GSM480207 extract 1	532.202	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	107.315	2e-4	P
	GSM480209 extract 1	122.464	2e-4	P
	GSM480210 extract 1	103.252	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	230.228	2e-4	P
	GSM480219 extract 1	182.962	2e-4	P
	GSM480220 extract 1	212.795	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	159.09	2e-4	P
	GSM480223 extract 1	155.985	2e-4	P
	GSM480222 extract 1	192.03	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	399.79	2e-4	P
	GSM480192 extract 1	300.481	2e-4	P
	GSM480191 extract 1	177.907	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	330.726	2e-4	P
	GSM480196 extract 1	231.029	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	470.663	2e-4	P
	GSM480198 extract 1	554.24	2e-4	P
	GSM480199 extract 1	829.284	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	484.515	2e-4	P
	GSM480194 extract 1	222.718	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	446.349	2e-4	P
	GSM480229 extract 1	565.579	2e-4	P
	GSM480230 extract 1	536.316	2e-4	P
	GSM480231 extract 1	230.49	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	559.377	2e-4	P
	GSM480169 extract 1	199.726	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	804.604	2e-4	P
	GSM480173 extract 1	956.066	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	134.232	2e-4	P
	GSM480176 extract 1	175.523	2e-4	P
	GSM480175 extract 1	126.335	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	117.572	2e-4	P
	GSM480178 extract 1	127.084	2e-4	P
	GSM480177 extract 1	146.15	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	137.71	2e-4	P
	GSM480217 extract 1	148.351	2e-4	P
	GSM480216 extract 1	165.424	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	365.069	2e-4	P
	GSM480181 extract 1	249.839	2e-4	P
	GSM480182 extract 1	320.924	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	262.643	2e-4	P
	GSM480186 extract 1	159.313	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	827.872	2e-4	P
	GSM480188 extract 1	697.425	2e-4	P
	GSM480187 extract 1	638.57	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	456.103	2e-4	P
	GSM480184 extract 1	143.604	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	668.751	2e-4	P
	GSM480224 extract 1	497.46	2e-4	P
	GSM480227 extract 1	219.119	2e-4	P
	GSM480226 extract 1	427.014	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	234.473	2e-4	P
	GSM480166 extract 1	189.335	2e-4	P
	GSM480167 extract 1	203.785	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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