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Expression Template: Les.2765.3.S1_a_at

Template Basic Information

Template name:	Les.2765.3.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U566762
External db links:	GenBank: AW442756

Annotations for unigene SGN-U566762 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|46452120\|gb\|AAS98165.1\|	545	3e-153	97.54	855 bp (59.5%)	1
Description:	hypersensitive-induced reaction protein [Capsicum annuum]
arabidopsis	blastx	At5G62740.1	511	3e-145	91.49	846 bp (58.9%)	1
Description:	band 7 family protein \| chr5:25218546-25219761 FORWARD
swissprot	blastx	P16148	227	1e-58	63.1	504 bp (35.1%)	1
Description:	Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2765.3.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.2765.3.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.2765.3.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
Les.2765.3.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.2765.3.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.2765.3.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.2765.3.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.2765.3.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.2765.3.S1_a_at:ProbePair9	PM	data not available	data not available	data not available
Les.2765.3.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.2765.3.S1_a_at:ProbePair10	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	423.04	423.04	141.87	0.34
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	892.77	905.79	34.26	0.04
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1490.82	1535.50	208.94	0.14
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1343.00	1334.76	257.07	0.19
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	944.55	937.21	134.18	0.14
	Gene expression data from Aft red fruit peel	exocarp	3	3	1205.67	1270.08	195.37	0.16
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	998.94	945.03	119.83	0.12
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1747.80	1795.67	206.62	0.12
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	911.91	878.36	66.86	0.07
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	591.83	591.83	119.05	0.20
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1060.94	1100.66	133.10	0.13
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	428.40	428.40	37.10	0.09
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	771.52	719.84	200.07	0.26
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	455.50	455.50	86.92	0.19
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	600.32	600.32	76.33	0.13
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	815.50	792.49	46.10	0.06
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	664.74	640.88	54.28	0.08
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1111.44	1064.15	124.21	0.11
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	946.51	1018.89	136.40	0.14
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	977.26	937.69	101.80	0.10
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	722.03	722.03	28.24	0.04
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	1221.04	1223.93	36.04	0.03
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	486.16	486.16	29.61	0.06
	Gene expression data from Micro-Tom root	root	3	3	704.67	714.07	55.81	0.08

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	523.361	2e-4	P
	GSM480171 extract 1	322.722	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	905.792	2e-4	P
	GSM480201 extract 1	853.907	2e-4	P
	GSM480202 extract 1	918.621	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1535.5	2e-4	P
	GSM480216 extract 1	1673.81	2e-4	P
	GSM480217 extract 1	1263.16	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	1415.4	2e-4	P
	GSM480226 extract 1	1655.36	2e-4	P
	GSM480225 extract 1	1254.12	2e-4	P
	GSM480227 extract 1	1047.11	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	1082.26	2e-4	P
	GSM480207 extract 1	814.193	2e-4	P
	GSM480208 extract 1	937.208	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1270.08	2e-4	P
	GSM480209 extract 1	986.217	2e-4	P
	GSM480211 extract 1	1360.7	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	945.034	2e-4	P
	GSM480220 extract 1	915.521	2e-4	P
	GSM480219 extract 1	1136.25	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1521.44	2e-4	P
	GSM480222 extract 1	1795.67	2e-4	P
	GSM480223 extract 1	1926.28	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	988.908	2e-4	P
	GSM480191 extract 1	868.467	2e-4	P
	GSM480192 extract 1	878.359	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	676.018	2e-4	P
	GSM480196 extract 1	507.651	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	1100.66	2e-4	P
	GSM480197 extract 1	1169.67	2e-4	P
	GSM480198 extract 1	912.504	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	454.64	2e-4	P
	GSM480194 extract 1	402.168	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	602.783	2e-4	P
	GSM480229 extract 1	641.634	2e-4	P
	GSM480230 extract 1	798.045	2e-4	P
	GSM480231 extract 1	1043.63	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	394.039	2e-4	P
	GSM480168 extract 1	516.964	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	546.35	2e-4	P
	GSM480172 extract 1	654.294	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	785.446	2e-4	P
	GSM480176 extract 1	868.575	2e-4	P
	GSM480174 extract 1	792.489	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	626.484	2e-4	P
	GSM480177 extract 1	640.879	2e-4	P
	GSM480179 extract 1	726.864	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1064.15	2e-4	P
	GSM480203 extract 1	1252.35	2e-4	P
	GSM480205 extract 1	1017.81	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	1031.46	2e-4	P
	GSM480212 extract 1	789.174	2e-4	P
	GSM480214 extract 1	1018.89	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1092.9	2e-4	P
	GSM480182 extract 1	901.18	2e-4	P
	GSM480181 extract 1	937.691	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	702.06	2e-4	P
	GSM480186 extract 1	741.998	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	1223.93	2e-4	P
	GSM480187 extract 1	1255.55	2e-4	P
	GSM480189 extract 1	1183.65	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	465.219	2e-4	P
	GSM480184 extract 1	507.09	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	644.751	2e-4	P
	GSM480166 extract 1	755.177	2e-4	P
	GSM480167 extract 1	714.073	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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