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Expression Template: Les.4397.2.A1_at

Template Basic Information

Template name:	Les.4397.2.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U578709 SGN-U578709
External db links:	GenBank: AW218741

Annotations for unigene SGN-U578709 (manual: 4 | blast: 3 | go: 4 )

Manual annotations

Based on clone cLES-20-F5, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: ribosomal protein Annotation Keywords: protein biosynthesis; ribosome complex

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|40287526\|gb\|AAR83877.1\|	362	3e-98	91.38	693 bp (54.0%)	1
Description:	60S ribosomal protein L19 [Capsicum annuum]
arabidopsis	blastx	At3G16780.1	325	3e-89	89.84	561 bp (43.7%)	1
Description:	60S ribosomal protein L19 (RPL19B) \| chr3:5708988-5710255 FORWARD
swissprot	blastx	Q9SRX2	325	3e-88	90.43	564 bp (43.9%)	1
Description:	60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1

GO Terms Annotations

GO:0003735structural constituent of ribosome
GO:0006412protein biosynthesis
GO:0005840ribosome
GO:0005622intracellular

Annotations for unigene SGN-U578709 (manual: 4 | blast: 3 | go: 4 )

Manual annotations

Based on clone cLES-20-F5, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: ribosomal protein Annotation Keywords: protein biosynthesis; ribosome complex

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|40287526\|gb\|AAR83877.1\|	362	3e-98	91.38	693 bp (54.0%)	1
Description:	60S ribosomal protein L19 [Capsicum annuum]
arabidopsis	blastx	At3G16780.1	325	3e-89	89.84	561 bp (43.7%)	1
Description:	60S ribosomal protein L19 (RPL19B) \| chr3:5708988-5710255 FORWARD
swissprot	blastx	Q9SRX2	325	3e-88	90.43	564 bp (43.9%)	1
Description:	60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1

GO Terms Annotations

GO:0005622intracellular
GO:0005840ribosome
GO:0003735structural constituent of ribosome
GO:0006412protein biosynthesis

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4397.2.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4397.2.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4397.2.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4397.2.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4397.2.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4397.2.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4397.2.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4397.2.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4397.2.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4397.2.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4397.2.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1001.13	1001.13	198.00	0.20
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1367.41	1505.31	298.58	0.22
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1925.77	1934.24	177.26	0.09
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	361.28	361.28	207.85	0.58
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	338.41	338.41	69.99	0.21
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	845.78	847.60	159.24	0.19
	Gene expression data from Aft red fruit peel	exocarp	3	3	160.45	143.88	29.56	0.18
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	728.12	791.16	183.53	0.25
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	5.59	5.19	2.49	0.44
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	759.27	525.00	679.70	0.90
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	9.19	9.19	3.08	0.33
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	5.06	6.05	2.24	0.44
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	17.05	17.05	11.34	0.66
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	39.95	45.97	26.38	0.66
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1275.56	1275.56	14.53	0.01
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1577.19	1577.19	18.09	0.01
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	3342.90	3334.92	386.21	0.12
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1507.59	1510.52	52.51	0.03
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	662.88	601.19	121.75	0.18
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	13.18	12.64	1.50	0.11
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1357.12	1129.49	451.96	0.33
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	66.00	77.51	35.93	0.54
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	410.31	487.25	237.25	0.58
	Gene expression data from Micro-Tom root	root	3	3	457.33	440.13	34.93	0.08

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	1141.14	2e-4	P
	GSM480171 extract 1	861.123	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1572.12	2e-4	P
	GSM480200 extract 1	1024.81	2e-4	P
	GSM480202 extract 1	1505.31	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	2098.65	2e-4	P
	GSM480214 extract 1	1934.24	2e-4	P
	GSM480213 extract 1	1744.43	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	214.312	2e-4	P
	GSM480186 extract 1	508.25	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	387.899	2e-4	P
	GSM480183 extract 1	288.917	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	847.6	2e-4	P
	GSM480207 extract 1	685.645	2e-4	P
	GSM480208 extract 1	1004.11	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	142.887	2e-4	P
	GSM480209 extract 1	143.88	2e-4	P
	GSM480210 extract 1	194.57	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	791.157	2e-4	P
	GSM480219 extract 1	521.386	2e-4	P
	GSM480220 extract 1	871.827	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	3.33692	0.304	A
	GSM480222 extract 1	8.25844	0.171	A
	GSM480223 extract 1	5.18875	0.334	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	524.998	2e-4	P
	GSM480192 extract 1	1525.12	2e-4	P
	GSM480191 extract 1	227.699	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	11.3685	0.030	P
	GSM480195 extract 1	7.01673	0.466	A
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	2.49353	0.399	A
	GSM480197 extract 1	6.62249	0.019	P
	GSM480199 extract 1	6.05197	0.666	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	25.0638	0.004	P
	GSM480194 extract 1	9.03335	0.014	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	49.3294	0.002	P
	GSM480228 extract 1	64.9334	0.001	P
	GSM480230 extract 1	42.602	0.001	P
	GSM480231 extract 1	2.95217	0.304	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1285.84	2e-4	P
	GSM480169 extract 1	1265.29	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1564.4	2e-4	P
	GSM480173 extract 1	1589.99	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	3733.04	2e-4	P
	GSM480174 extract 1	3334.92	2e-4	P
	GSM480176 extract 1	2960.74	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	1558.57	2e-4	P
	GSM480177 extract 1	1510.52	2e-4	P
	GSM480179 extract 1	1453.68	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	803.125	2e-4	P
	GSM480203 extract 1	584.317	2e-4	P
	GSM480205 extract 1	601.189	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	14.8743	7e-4	P
	GSM480217 extract 1	12.0327	0.068	A
	GSM480216 extract 1	12.6396	0.011	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1064.23	2e-4	P
	GSM480182 extract 1	1877.63	2e-4	P
	GSM480181 extract 1	1129.49	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	77.5131	7e-4	P
	GSM480189 extract 1	94.76	7e-4	P
	GSM480187 extract 1	25.7293	0.004	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	562.495	2e-4	P
	GSM480225 extract 1	411.998	2e-4	P
	GSM480226 extract 1	592.087	2e-4	P
	GSM480227 extract 1	74.6656	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	440.133	2e-4	P
	GSM480166 extract 1	497.517	2e-4	P
	GSM480167 extract 1	434.331	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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