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Expression Template: Les.4426.1.A1_s_at

Template Basic Information

Template name:	Les.4426.1.A1_s_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	GenBank: BG628344

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4426.1.A1_s_at:ProbePair0	PM	data not available	data not available	data not available
Les.4426.1.A1_s_at:ProbePair1	PM	data not available	data not available	data not available
Les.4426.1.A1_s_at:ProbePair10	PM	data not available	data not available	data not available
Les.4426.1.A1_s_at:ProbePair2	PM	data not available	data not available	data not available
Les.4426.1.A1_s_at:ProbePair3	PM	data not available	data not available	data not available
Les.4426.1.A1_s_at:ProbePair4	PM	data not available	data not available	data not available
Les.4426.1.A1_s_at:ProbePair5	PM	data not available	data not available	data not available
Les.4426.1.A1_s_at:ProbePair6	PM	data not available	data not available	data not available
Les.4426.1.A1_s_at:ProbePair7	PM	data not available	data not available	data not available
Les.4426.1.A1_s_at:ProbePair8	PM	data not available	data not available	data not available
Les.4426.1.A1_s_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	3947.88	3947.88	199.87	0.05
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	3335.00	3191.39	378.68	0.11
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	2281.78	2070.56	398.67	0.17
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	3049.31	2861.53	706.72	0.23
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	3922.52	3953.29	278.52	0.07
	Gene expression data from Aft red fruit peel	exocarp	3	3	4130.57	4009.79	247.64	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	3595.72	3601.53	29.46	0.01
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	3672.20	3603.91	182.93	0.05
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	3512.01	3112.85	805.37	0.23
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	4838.21	4838.21	1341.45	0.28
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3003.97	2361.66	1417.52	0.47
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	5666.15	5666.15	1269.09	0.22
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	5541.15	5531.36	906.40	0.16
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	4208.98	4208.98	164.01	0.04
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	5047.21	5047.21	189.74	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	4407.16	4414.81	234.23	0.05
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	5410.31	5426.09	202.56	0.04
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	3725.17	3857.94	388.48	0.10
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	3339.05	3359.66	217.08	0.07
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	5285.79	5285.79	295.00	0.06
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	3371.93	3437.65	361.50	0.11
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	4492.29	4492.29	647.65	0.14
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	6296.84	6688.56	2285.90	0.36
	Gene expression data from Micro-Tom root	root	3	3	3690.53	3764.13	172.44	0.05

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	4089.21	2e-4	P
	GSM480171 extract 1	3806.55	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	3191.39	2e-4	P
	GSM480201 extract 1	3049.14	2e-4	P
	GSM480202 extract 1	3764.48	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	2070.56	2e-4	P
	GSM480215 extract 1	2033.16	2e-4	P
	GSM480216 extract 1	2741.62	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	2455.45	2e-4	P
	GSM480182 extract 1	2861.53	2e-4	P
	GSM480180 extract 1	3830.96	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	4184.38	2e-4	P
	GSM480206 extract 1	3953.29	2e-4	P
	GSM480208 extract 1	3629.89	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	3966.5	2e-4	P
	GSM480211 extract 1	4415.42	2e-4	P
	GSM480209 extract 1	4009.79	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	3621.84	2e-4	P
	GSM480219 extract 1	3563.78	2e-4	P
	GSM480220 extract 1	3601.53	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	3533.23	2e-4	P
	GSM480223 extract 1	3879.45	2e-4	P
	GSM480221 extract 1	3603.91	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	2984.17	2e-4	P
	GSM480190 extract 1	4439	2e-4	P
	GSM480191 extract 1	3112.85	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	5786.75	2e-4	P
	GSM480196 extract 1	3889.66	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	2361.66	2e-4	P
	GSM480197 extract 1	4628.94	2e-4	P
	GSM480199 extract 1	2021.31	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	6563.53	2e-4	P
	GSM480194 extract 1	4768.76	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	6195.69	2e-4	P
	GSM480228 extract 1	4867.03	2e-4	P
	GSM480230 extract 1	6440.22	2e-4	P
	GSM480231 extract 1	4661.65	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	4093	2e-4	P
	GSM480169 extract 1	4324.95	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	5181.38	2e-4	P
	GSM480173 extract 1	4913.05	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	4414.81	2e-4	P
	GSM480175 extract 1	4169.2	2e-4	P
	GSM480176 extract 1	4637.47	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	5200.33	2e-4	P
	GSM480177 extract 1	5426.09	2e-4	P
	GSM480179 extract 1	5604.52	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	4029.86	2e-4	P
	GSM480204 extract 1	3857.94	2e-4	P
	GSM480205 extract 1	3287.72	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	3112.4	2e-4	P
	GSM480213 extract 1	3359.66	2e-4	P
	GSM480214 extract 1	3545.08	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	5077.2	2e-4	P
	GSM480186 extract 1	5494.39	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	3437.65	2e-4	P
	GSM480187 extract 1	3696.06	2e-4	P
	GSM480189 extract 1	2982.08	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	4950.24	2e-4	P
	GSM480184 extract 1	4034.33	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	6869.6	2e-4	P
	GSM480225 extract 1	8643.43	2e-4	P
	GSM480226 extract 1	6507.53	2e-4	P
	GSM480227 extract 1	3166.8	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	3813.96	2e-4	P
	GSM480166 extract 1	3764.13	2e-4	P
	GSM480167 extract 1	3493.5	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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