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Expression Template: Les.4492.3.S1_at

Template Basic Information

Template name:	Les.4492.3.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577555
External db links:	GenBank: CK715138

Annotations for unigene SGN-U577555 (manual: 5 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLES-20-E6, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: secretory peroxidase Annotation Keywords: other; enzyme; peroxidase; secretion

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|4927284\|gb\|AAD33072.1\|AF149251_1	601	9e-170	94.43	915 bp (35.2%)	3
Description:	secretory peroxidase [Nicotiana tabacum]
arabidopsis	blastx	At4G21960.1	540	2e-153	84.59	915 bp (35.2%)	3
Description:	Symbols: PRXR1 \| PRXR1 (peroxidase 42); peroxidase \| chr4:11646625-11648324 REVERSE
swissprot	blastx	Q9SB81	540	2e-152	84.59	915 bp (35.2%)	3
Description:	Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4492.3.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4492.3.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4492.3.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4492.3.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4492.3.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4492.3.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4492.3.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4492.3.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4492.3.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4492.3.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4492.3.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	5966.19	5966.19	2948.19	0.49
	Gene expression data from Aft red fruit flesh	endocarp	3	3	2.67	2.29	1.02	0.38
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	720.60	673.87	121.66	0.17
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	188.59	228.50	89.40	0.47
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	5.21	2.27	5.12	0.98
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	5.89	5.43	4.46	0.76
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	370.07	360.10	36.27	0.10
	Gene expression data from Aft red fruit peel	exocarp	3	3	19.38	22.51	7.74	0.40
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	744.11	679.62	119.07	0.16
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2.23	1.97	1.59	0.71
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	36.39	34.55	16.43	0.45
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	3.44	3.44	0.58	0.17
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1.62	1.55	0.67	0.42
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	24.46	24.46	16.87	0.69
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2.38	2.62	0.89	0.37
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1551.36	1551.36	940.37	0.61
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	6453.62	6453.62	122.11	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	5396.73	4370.26	2376.69	0.44
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	7895.80	8066.00	322.93	0.04
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	384.13	383.66	61.04	0.16
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1.97	1.94	0.68	0.35
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	11.93	11.93	11.40	0.96
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	133.31	133.31	44.53	0.33
	Gene expression data from Micro-Tom root	root	3	3	10.89	10.90	0.93	0.09

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	3881.5	2e-4	P
	GSM480171 extract 1	8050.87	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	1.89108	0.666	A
	GSM480204 extract 1	2.2931	0.666	A
	GSM480205 extract 1	3.83059	0.666	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	673.87	2e-4	P
	GSM480213 extract 1	629.231	2e-4	P
	GSM480214 extract 1	858.7	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	86.1784	0.001	P
	GSM480181 extract 1	251.081	7e-4	P
	GSM480182 extract 1	228.501	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	2.22265	0.932	A
	GSM480189 extract 1	11.1228	0.601	A
	GSM480188 extract 1	2.27272	0.568	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	10.8814	0.130	A
	GSM480227 extract 1	8.42902	0.568	A
	GSM480225 extract 1	1.83159	0.916	A
	GSM480226 extract 1	2.43408	0.534	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	339.83	2e-4	P
	GSM480208 extract 1	410.281	2e-4	P
	GSM480207 extract 1	360.096	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	22.5104	0.024	P
	GSM480211 extract 1	10.5659	0.081	A
	GSM480209 extract 1	25.0667	0.056	M
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	881.517	2e-4	P
	GSM480219 extract 1	671.205	2e-4	P
	GSM480220 extract 1	679.62	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	0.79672	0.963	A
	GSM480221 extract 1	1.96717	0.754	A
	GSM480222 extract 1	3.93596	0.781	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	20.9509	0.056	M
	GSM480192 extract 1	53.6624	0.001	P
	GSM480191 extract 1	34.5459	0.030	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	3.02867	0.500	A
	GSM480196 extract 1	3.8552	0.399	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	2.32356	0.500	A
	GSM480199 extract 1	1.54556	0.829	A
	GSM480198 extract 1	0.980688	0.970	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	36.3852	0.003	P
	GSM480193 extract 1	12.525	0.334	A
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	3.17572	0.466	A
	GSM480229 extract 1	2.67797	0.829	A
	GSM480228 extract 1	1.11276	0.805	A
	GSM480230 extract 1	2.56751	0.666	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	886.416	2e-4	P
	GSM480169 extract 1	2216.3	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	6367.27	2e-4	P
	GSM480172 extract 1	6539.96	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	4370.26	2e-4	P
	GSM480175 extract 1	3705.78	2e-4	P
	GSM480176 extract 1	8114.15	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	8066	2e-4	P
	GSM480178 extract 1	8098.03	2e-4	P
	GSM480177 extract 1	7523.38	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	323.33	2e-4	P
	GSM480201 extract 1	383.658	2e-4	P
	GSM480202 extract 1	445.402	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1.93712	0.870	A
	GSM480217 extract 1	1.31267	0.954	A
	GSM480216 extract 1	2.67372	0.568	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	19.9916	0.171	A
	GSM480185 extract 1	3.87442	0.754	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	164.797	2e-4	P
	GSM480183 extract 1	101.816	0.001	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	10.8954	0.246	A
	GSM480165 extract 1	9.95384	0.432	A
	GSM480166 extract 1	11.8113	0.334	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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