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Expression Template: Les.2854.1.S1_at

Template Basic Information

Template name:	Les.2854.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581707
External db links:	GenBank: CK574983

Annotations for unigene SGN-U581707 (manual: 2 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEG-1-M7, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: calmodulin Annotation Keywords: signal transduction; calcium signaling

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157348444\|emb\|CAO23336.1\|	182	4e-44	62.71	528 bp (49.9%)	2
Description:	unnamed
arabidopsis	blastx	At2G41410.1	132	5e-31	47.13	519 bp (49.0%)	2
Description:	calmodulin, putative \| chr2:17269163-17269813 REVERSE
swissprot	blastx	P30188	132	4e-30	47.13	519 bp (49.0%)	2
Description:	Probable calcium-binding protein CML35 OS=Arabidopsis thaliana GN=CML35 PE=1 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2854.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.2854.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.2854.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.2854.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.2854.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.2854.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.2854.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.2854.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.2854.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.2854.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.2854.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	996.96	996.96	129.20	0.13
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1118.62	1117.90	24.64	0.02
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	688.13	678.89	46.57	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1137.88	912.79	469.47	0.41
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1780.67	1749.18	124.14	0.07
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1675.43	1675.43	264.43	0.16
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1277.18	1257.36	180.06	0.14
	Gene expression data from Aft red fruit peel	exocarp	3	3	1063.41	1109.22	113.42	0.11
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1178.91	1214.59	66.53	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	963.24	1001.62	126.59	0.13
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1265.49	1180.88	568.76	0.45
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1817.30	1817.30	240.58	0.13
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1507.98	1595.12	260.74	0.17
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1774.06	1774.06	7.86	0.00
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1976.44	2117.45	491.92	0.25
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1159.98	1159.98	118.79	0.10
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1521.94	1521.94	6.06	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	606.94	694.78	156.81	0.26
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	397.31	304.43	187.56	0.47
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1198.44	1182.24	88.72	0.07
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1008.14	956.17	135.72	0.13
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	1419.76	1419.76	309.22	0.22
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1504.84	1547.49	207.36	0.14
	Gene expression data from Micro-Tom root	root	3	3	620.95	604.60	42.43	0.07

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	1088.31	2e-4	P
	GSM480171 extract 1	905.6	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	1117.9	2e-4	P
	GSM480212 extract 1	1094.35	2e-4	P
	GSM480214 extract 1	1143.61	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	678.892	2e-4	P
	GSM480216 extract 1	646.873	2e-4	P
	GSM480215 extract 1	738.623	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	823.335	2e-4	P
	GSM480180 extract 1	1677.51	2e-4	P
	GSM480182 extract 1	912.789	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	1675.31	2e-4	P
	GSM480188 extract 1	1749.18	2e-4	P
	GSM480189 extract 1	1917.53	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	1488.45	2e-4	P
	GSM480183 extract 1	1862.41	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	1107.86	2e-4	P
	GSM480206 extract 1	1466.33	2e-4	P
	GSM480208 extract 1	1257.36	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1146.77	2e-4	P
	GSM480209 extract 1	934.249	2e-4	P
	GSM480211 extract 1	1109.22	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	1219.99	2e-4	P
	GSM480218 extract 1	1214.59	2e-4	P
	GSM480220 extract 1	1102.16	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	1066.2	2e-4	P
	GSM480221 extract 1	821.903	2e-4	P
	GSM480223 extract 1	1001.62	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	1871.82	2e-4	P
	GSM480191 extract 1	743.784	2e-4	P
	GSM480192 extract 1	1180.88	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1647.18	2e-4	P
	GSM480195 extract 1	1987.41	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1595.12	2e-4	P
	GSM480198 extract 1	1214.83	2e-4	P
	GSM480199 extract 1	1713.99	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1779.62	2e-4	P
	GSM480194 extract 1	1768.51	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	2056.7	2e-4	P
	GSM480229 extract 1	2178.19	2e-4	P
	GSM480230 extract 1	2400.71	2e-4	P
	GSM480231 extract 1	1270.18	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	1075.99	2e-4	P
	GSM480168 extract 1	1243.98	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1526.22	2e-4	P
	GSM480173 extract 1	1517.65	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	700.129	2e-4	P
	GSM480175 extract 1	694.782	2e-4	P
	GSM480176 extract 1	425.899	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	613.186	2e-4	P
	GSM480178 extract 1	304.426	2e-4	P
	GSM480179 extract 1	274.306	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1118.94	2e-4	P
	GSM480200 extract 1	1182.24	2e-4	P
	GSM480202 extract 1	1294.14	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	1162.17	2e-4	P
	GSM480204 extract 1	906.089	2e-4	P
	GSM480205 extract 1	956.167	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1201.11	2e-4	P
	GSM480186 extract 1	1638.41	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	1687.78	2e-4	P
	GSM480225 extract 1	1447.61	2e-4	P
	GSM480226 extract 1	1647.37	2e-4	P
	GSM480227 extract 1	1236.62	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	604.595	2e-4	P
	GSM480165 extract 1	669.123	2e-4	P
	GSM480166 extract 1	589.136	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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