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Expression Template: Les.3293.1.S1_at

Template Basic Information

Template name:	Les.3293.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579558
External db links:	GenBank: BI207336

Annotations for unigene SGN-U579558 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLER-1-H20, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "protease, ClpA protease, ATP-binding subunit" Annotation Keywords: protein degredation; protease

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|399213\|sp\|P31542\|CLPAB_SOLLC	1597	99.78	2769 bp (85.8%)	1
Description:	RecName:
arabidopsis	blastx	At5G50920.1	1410	88.72	2763 bp (85.6%)	1
Description:	Symbols: ATHSP93-V, HSP93-V, CLPC, DCA1 \| CLPC (HEAT SHOCK PROTEIN 93-V); ATP binding / ATPase&hellip
swissprot	blastx	P31542	1597	99.78	2769 bp (85.8%)	1
Description:	ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lyco&hellip

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3293.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3293.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3293.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3293.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3293.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3293.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3293.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3293.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3293.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3293.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3293.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	3785.81	3785.81	1025.52	0.27
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	3652.15	3627.15	171.98	0.05
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	4612.91	4652.00	145.65	0.03
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	5553.32	5625.26	182.45	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	3175.86	3059.47	819.74	0.26
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	3888.85	3888.85	1099.57	0.28
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	3207.07	3207.07	247.95	0.08
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	4026.43	3960.02	282.63	0.07
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	3506.84	3492.73	71.86	0.02
	Gene expression data from Aft red fruit peel	exocarp	3	3	3895.07	3759.27	365.14	0.09
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	4270.19	4225.22	109.90	0.03
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	5745.82	5679.03	475.81	0.08
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2586.42	2795.12	409.39	0.16
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	4376.07	4376.07	112.51	0.03
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3908.60	4015.16	298.46	0.08
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	3147.23	3147.23	562.65	0.18
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	5131.46	5209.97	434.62	0.08
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	2058.73	2058.73	440.97	0.21
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	4312.61	4312.61	11.72	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	5037.77	5169.51	346.10	0.07
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	4066.55	4041.48	127.71	0.03
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	4251.68	4296.27	323.22	0.08
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	4104.92	3933.33	487.93	0.12
	Gene expression data from Micro-Tom root	root	3	3	1509.27	1531.64	117.67	0.08

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	3060.66	2e-4	P
	GSM480171 extract 1	4510.96	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	3835.26	2e-4	P
	GSM480201 extract 1	3627.15	2e-4	P
	GSM480202 extract 1	3494.03	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	4735.03	2e-4	P
	GSM480212 extract 1	4652	2e-4	P
	GSM480214 extract 1	4451.7	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	5345.87	2e-4	P
	GSM480216 extract 1	5688.84	2e-4	P
	GSM480217 extract 1	5625.26	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	3059.47	2e-4	P
	GSM480180 extract 1	4047.58	2e-4	P
	GSM480182 extract 1	2420.54	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	4666.37	2e-4	P
	GSM480186 extract 1	3111.34	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	3382.4	2e-4	P
	GSM480184 extract 1	3031.74	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	3763.79	2e-4	P
	GSM480224 extract 1	4421.89	2e-4	P
	GSM480227 extract 1	4012.2	2e-4	P
	GSM480226 extract 1	3907.84	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	3584.71	2e-4	P
	GSM480206 extract 1	3443.09	2e-4	P
	GSM480208 extract 1	3492.73	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	3759.27	2e-4	P
	GSM480211 extract 1	3617.29	2e-4	P
	GSM480209 extract 1	4308.66	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	4395.44	2e-4	P
	GSM480219 extract 1	4225.22	2e-4	P
	GSM480220 extract 1	4189.9	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	5306.94	2e-4	P
	GSM480221 extract 1	6251.5	2e-4	P
	GSM480223 extract 1	5679.03	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	2795.12	2e-4	P
	GSM480190 extract 1	2849.4	2e-4	P
	GSM480192 extract 1	2114.73	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	4296.51	2e-4	P
	GSM480195 extract 1	4455.63	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	4139.15	2e-4	P
	GSM480198 extract 1	4015.16	2e-4	P
	GSM480199 extract 1	3571.48	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	2749.37	2e-4	P
	GSM480194 extract 1	3545.08	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	4561.83	2e-4	P
	GSM480230 extract 1	5037.31	2e-4	P
	GSM480229 extract 1	5382.63	2e-4	P
	GSM480231 extract 1	5544.09	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	2370.54	2e-4	P
	GSM480168 extract 1	1746.91	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	4304.32	2e-4	P
	GSM480172 extract 1	4320.9	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	5298.65	2e-4	P
	GSM480174 extract 1	5169.51	2e-4	P
	GSM480176 extract 1	4645.15	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	4041.48	2e-4	P
	GSM480179 extract 1	4204.93	2e-4	P
	GSM480178 extract 1	3953.23	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	4550.29	2e-4	P
	GSM480203 extract 1	3908.48	2e-4	P
	GSM480205 extract 1	4296.27	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	3725.96	2e-4	P
	GSM480187 extract 1	4655.47	2e-4	P
	GSM480189 extract 1	3933.33	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	1614.15	2e-4	P
	GSM480166 extract 1	1531.64	2e-4	P
	GSM480167 extract 1	1382.03	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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